Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2692

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2691 and Shewana3_2692 are separated by 106 nucleotidesShewana3_2692 and Shewana3_2693 are separated by 169 nucleotides Shewana3_2691: Shewana3_2691 - DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada (RefSeq), at 3,217,902 to 3,218,795 _2691 Shewana3_2692: Shewana3_2692 - streptogramin A acetyl transferase (RefSeq), at 3,218,902 to 3,219,576 _2692 Shewana3_2693: Shewana3_2693 - AraC family transcriptional regulator (RefSeq), at 3,219,746 to 3,220,582 _2693 Position (kb) 3218 3219 3220Strain fitness (log2 ratio) -2 -1 0 1 2at 3218.085 kb on - strand, within Shewana3_2691at 3218.140 kb on + strand, within Shewana3_2691at 3218.148 kb on - strand, within Shewana3_2691at 3218.153 kb on - strand, within Shewana3_2691at 3218.184 kb on - strand, within Shewana3_2691at 3218.222 kb on + strand, within Shewana3_2691at 3218.363 kb on + strand, within Shewana3_2691at 3218.478 kb on + strand, within Shewana3_2691at 3218.509 kb on - strand, within Shewana3_2691at 3218.527 kb on + strand, within Shewana3_2691at 3218.535 kb on - strand, within Shewana3_2691at 3218.535 kb on - strand, within Shewana3_2691at 3218.535 kb on - strand, within Shewana3_2691at 3218.535 kb on - strand, within Shewana3_2691at 3218.673 kb on - strand, within Shewana3_2691at 3218.788 kb on - strandat 3218.822 kb on - strandat 3218.864 kb on + strandat 3218.930 kb on + strandat 3219.041 kb on + strand, within Shewana3_2692at 3219.175 kb on + strand, within Shewana3_2692at 3219.183 kb on - strand, within Shewana3_2692at 3219.286 kb on - strand, within Shewana3_2692at 3219.303 kb on - strand, within Shewana3_2692at 3219.320 kb on + strand, within Shewana3_2692at 3219.598 kb on + strandat 3219.785 kb on - strandat 3219.792 kb on + strandat 3219.802 kb on + strandat 3219.810 kb on - strandat 3219.859 kb on - strand, within Shewana3_2693at 3219.938 kb on - strand, within Shewana3_2693at 3220.127 kb on - strand, within Shewana3_2693at 3220.142 kb on - strand, within Shewana3_2693at 3220.169 kb on + strand, within Shewana3_2693at 3220.382 kb on - strand, within Shewana3_2693at 3220.446 kb on + strand, within Shewana3_2693

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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3,218,085 - Shewana3_2691 0.20 -0.6
3,218,140 + Shewana3_2691 0.27 +1.3
3,218,148 - Shewana3_2691 0.28 +0.4
3,218,153 - Shewana3_2691 0.28 -0.9
3,218,184 - Shewana3_2691 0.32 +1.8
3,218,222 + Shewana3_2691 0.36 -0.8
3,218,363 + Shewana3_2691 0.52 -0.7
3,218,478 + Shewana3_2691 0.64 -1.2
3,218,509 - Shewana3_2691 0.68 -0.0
3,218,527 + Shewana3_2691 0.70 +0.4
3,218,535 - Shewana3_2691 0.71 +0.6
3,218,535 - Shewana3_2691 0.71 -0.2
3,218,535 - Shewana3_2691 0.71 -0.3
3,218,535 - Shewana3_2691 0.71 +0.2
3,218,673 - Shewana3_2691 0.86 -0.8
3,218,788 - -0.6
3,218,822 - -0.6
3,218,864 + +0.3
3,218,930 + +0.5
3,219,041 + Shewana3_2692 0.21 -1.2
3,219,175 + Shewana3_2692 0.40 -0.2
3,219,183 - Shewana3_2692 0.42 -0.2
3,219,286 - Shewana3_2692 0.57 +0.3
3,219,303 - Shewana3_2692 0.59 -0.6
3,219,320 + Shewana3_2692 0.62 -1.0
3,219,598 + +0.2
3,219,785 - -0.4
3,219,792 + -2.2
3,219,802 + -0.7
3,219,810 - +0.4
3,219,859 - Shewana3_2693 0.14 +0.4
3,219,938 - Shewana3_2693 0.23 -0.3
3,220,127 - Shewana3_2693 0.46 +0.1
3,220,142 - Shewana3_2693 0.47 +0.4
3,220,169 + Shewana3_2693 0.51 -0.7
3,220,382 - Shewana3_2693 0.76 -0.3
3,220,446 + Shewana3_2693 0.84 -0.2

Or see this region's nucleotide sequence