Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2588

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2587 and Shewana3_2588 are separated by 149 nucleotidesShewana3_2588 and Shewana3_2589 are separated by 151 nucleotidesShewana3_2589 and Shewana3_2590 are separated by 77 nucleotides Shewana3_2587: Shewana3_2587 - NnrS family protein (RefSeq), at 3,092,547 to 3,093,719 _2587 Shewana3_2588: Shewana3_2588 - phosphate-starvation-inducible E (RefSeq), at 3,093,869 to 3,094,273 _2588 Shewana3_2589: Shewana3_2589 - type IV pilus assembly PilZ (RefSeq), at 3,094,425 to 3,094,727 _2589 Shewana3_2590: Shewana3_2590 - hypothetical protein (RefSeq), at 3,094,805 to 3,095,473 _2590 Position (kb) 3093 3094 3095Strain fitness (log2 ratio) -1 0 1 2at 3092.891 kb on + strand, within Shewana3_2587at 3093.127 kb on + strand, within Shewana3_2587at 3093.227 kb on - strand, within Shewana3_2587at 3093.615 kb on + strandat 3093.676 kb on + strandat 3094.124 kb on - strand, within Shewana3_2588at 3094.300 kb on + strandat 3094.323 kb on - strandat 3094.497 kb on + strand, within Shewana3_2589at 3094.505 kb on - strand, within Shewana3_2589at 3094.530 kb on - strand, within Shewana3_2589at 3094.686 kb on - strand, within Shewana3_2589at 3094.686 kb on - strand, within Shewana3_2589at 3094.760 kb on + strandat 3094.760 kb on + strandat 3095.074 kb on + strand, within Shewana3_2590at 3095.077 kb on - strand, within Shewana3_2590at 3095.127 kb on + strand, within Shewana3_2590at 3095.203 kb on + strand, within Shewana3_2590at 3095.220 kb on + strand, within Shewana3_2590at 3095.220 kb on + strand, within Shewana3_2590at 3095.228 kb on - strand, within Shewana3_2590

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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3,092,891 + Shewana3_2587 0.29 -1.7
3,093,127 + Shewana3_2587 0.49 +0.0
3,093,227 - Shewana3_2587 0.58 -1.1
3,093,615 + -0.1
3,093,676 + +1.0
3,094,124 - Shewana3_2588 0.63 -1.0
3,094,300 + +1.1
3,094,323 - +0.5
3,094,497 + Shewana3_2589 0.24 +1.8
3,094,505 - Shewana3_2589 0.26 -0.8
3,094,530 - Shewana3_2589 0.35 +0.8
3,094,686 - Shewana3_2589 0.86 +1.8
3,094,686 - Shewana3_2589 0.86 -0.2
3,094,760 + -1.2
3,094,760 + +0.5
3,095,074 + Shewana3_2590 0.40 -0.5
3,095,077 - Shewana3_2590 0.41 +0.8
3,095,127 + Shewana3_2590 0.48 -1.1
3,095,203 + Shewana3_2590 0.59 +1.3
3,095,220 + Shewana3_2590 0.62 +1.2
3,095,220 + Shewana3_2590 0.62 -1.5
3,095,228 - Shewana3_2590 0.63 +1.8

Or see this region's nucleotide sequence