Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2584 and Shewana3_2585 are separated by 32 nucleotides Shewana3_2585 and Shewana3_2586 are separated by 32 nucleotides Shewana3_2586 and Shewana3_2587 are separated by 406 nucleotides
Shewana3_2584: Shewana3_2584 - lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq), at 3,087,442 to 3,089,244
_2584
Shewana3_2585: Shewana3_2585 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 3,089,277 to 3,091,598
_2585
Shewana3_2586: Shewana3_2586 - hypothetical protein (RefSeq), at 3,091,631 to 3,092,140
_2586
Shewana3_2587: Shewana3_2587 - NnrS family protein (RefSeq), at 3,092,547 to 3,093,719
_2587
Position (kb)
3089
3090
3091
3092 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3089.463 kb on - strand at 3089.467 kb on + strand at 3089.475 kb on - strand at 3089.901 kb on + strand, within Shewana3_2585 at 3089.995 kb on + strand, within Shewana3_2585 at 3090.003 kb on - strand, within Shewana3_2585 at 3090.120 kb on + strand, within Shewana3_2585 at 3090.128 kb on - strand, within Shewana3_2585 at 3090.191 kb on - strand, within Shewana3_2585 at 3090.225 kb on - strand, within Shewana3_2585 at 3090.457 kb on + strand, within Shewana3_2585 at 3090.457 kb on + strand, within Shewana3_2585 at 3090.700 kb on + strand, within Shewana3_2585 at 3090.925 kb on - strand, within Shewana3_2585 at 3090.931 kb on - strand, within Shewana3_2585 at 3090.949 kb on + strand, within Shewana3_2585 at 3090.968 kb on - strand, within Shewana3_2585 at 3091.049 kb on + strand, within Shewana3_2585 at 3091.050 kb on - strand, within Shewana3_2585 at 3091.057 kb on - strand, within Shewana3_2585 at 3091.222 kb on - strand, within Shewana3_2585 at 3091.398 kb on + strand at 3092.160 kb on + strand at 3092.186 kb on - strand at 3092.204 kb on + strand at 3092.325 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,089,463 - -0.5 3,089,467 + +0.0 3,089,475 - -2.3 3,089,901 + Shewana3_2585 0.27 +0.7 3,089,995 + Shewana3_2585 0.31 -1.0 3,090,003 - Shewana3_2585 0.31 +0.4 3,090,120 + Shewana3_2585 0.36 +0.5 3,090,128 - Shewana3_2585 0.37 -0.1 3,090,191 - Shewana3_2585 0.39 -1.1 3,090,225 - Shewana3_2585 0.41 +0.8 3,090,457 + Shewana3_2585 0.51 -2.1 3,090,457 + Shewana3_2585 0.51 -0.1 3,090,700 + Shewana3_2585 0.61 -0.7 3,090,925 - Shewana3_2585 0.71 -0.1 3,090,931 - Shewana3_2585 0.71 +0.3 3,090,949 + Shewana3_2585 0.72 -0.9 3,090,968 - Shewana3_2585 0.73 -1.1 3,091,049 + Shewana3_2585 0.76 -0.5 3,091,050 - Shewana3_2585 0.76 +0.4 3,091,057 - Shewana3_2585 0.77 -0.3 3,091,222 - Shewana3_2585 0.84 -0.2 3,091,398 + -0.8 3,092,160 + +0.7 3,092,186 - +0.9 3,092,204 + +0.0 3,092,325 + +1.9
Or see this region's nucleotide sequence