Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpxK and Shewana3_2584 are separated by 0 nucleotides Shewana3_2584 and Shewana3_2585 are separated by 32 nucleotides
Shewana3_2582: Shewana3_2582 - hypothetical protein (RefSeq), at 3,086,265 to 3,086,444
_2582
Shewana3_2583: lpxK - tetraacyldisaccharide 4'-kinase (RefSeq), at 3,086,434 to 3,087,441
lpxK
Shewana3_2584: Shewana3_2584 - lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq), at 3,087,442 to 3,089,244
_2584
Shewana3_2585: Shewana3_2585 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 3,089,277 to 3,091,598
_2585
Position (kb)
3087
3088
3089
3090 Strain fitness (log2 ratio)
-2
-1
0
1 at 3089.463 kb on - strand at 3089.467 kb on + strand at 3089.475 kb on - strand at 3089.901 kb on + strand, within Shewana3_2585 at 3089.995 kb on + strand, within Shewana3_2585 at 3090.003 kb on - strand, within Shewana3_2585 at 3090.120 kb on + strand, within Shewana3_2585 at 3090.128 kb on - strand, within Shewana3_2585 at 3090.191 kb on - strand, within Shewana3_2585 at 3090.225 kb on - strand, within Shewana3_2585
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,089,463 - -0.5 3,089,467 + +0.0 3,089,475 - -2.3 3,089,901 + Shewana3_2585 0.27 +0.7 3,089,995 + Shewana3_2585 0.31 -1.0 3,090,003 - Shewana3_2585 0.31 +0.4 3,090,120 + Shewana3_2585 0.36 +0.5 3,090,128 - Shewana3_2585 0.37 -0.1 3,090,191 - Shewana3_2585 0.39 -1.1 3,090,225 - Shewana3_2585 0.41 +0.8
Or see this region's nucleotide sequence