Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2554 and Shewana3_2555 are separated by 342 nucleotides Shewana3_2555 and Shewana3_2556 are separated by 116 nucleotides Shewana3_2556 and Shewana3_2557 are separated by 180 nucleotides
Shewana3_2554: Shewana3_2554 - 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq), at 3,056,179 to 3,057,054
_2554
Shewana3_2555: Shewana3_2555 - thioesterase superfamily protein (RefSeq), at 3,057,397 to 3,057,876
_2555
Shewana3_2556: Shewana3_2556 - hypothetical protein (RefSeq), at 3,057,993 to 3,058,361
_2556
Shewana3_2557: Shewana3_2557 - 3-oxoacyl-[acyl-carrier-protein] synthase II (RefSeq), at 3,058,542 to 3,059,780
_2557
Position (kb)
3057
3058 Strain fitness (log2 ratio)
-1
0
1
2 at 3056.500 kb on + strand, within Shewana3_2554 at 3056.500 kb on + strand, within Shewana3_2554 at 3056.508 kb on - strand, within Shewana3_2554 at 3056.558 kb on - strand, within Shewana3_2554 at 3056.613 kb on - strand, within Shewana3_2554 at 3056.938 kb on + strand, within Shewana3_2554 at 3056.941 kb on - strand, within Shewana3_2554 at 3056.962 kb on + strand, within Shewana3_2554 at 3056.962 kb on + strand, within Shewana3_2554 at 3056.970 kb on - strand at 3056.984 kb on - strand at 3056.984 kb on - strand at 3057.107 kb on + strand at 3057.146 kb on + strand at 3057.161 kb on - strand at 3057.248 kb on + strand at 3057.371 kb on - strand at 3057.474 kb on + strand, within Shewana3_2555 at 3057.540 kb on + strand, within Shewana3_2555 at 3057.617 kb on - strand, within Shewana3_2555 at 3057.701 kb on - strand, within Shewana3_2555 at 3058.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,056,500 + Shewana3_2554 0.37 +0.3 3,056,500 + Shewana3_2554 0.37 +0.3 3,056,508 - Shewana3_2554 0.38 +0.5 3,056,558 - Shewana3_2554 0.43 +1.1 3,056,613 - Shewana3_2554 0.50 +0.1 3,056,938 + Shewana3_2554 0.87 +0.9 3,056,941 - Shewana3_2554 0.87 +0.2 3,056,962 + Shewana3_2554 0.89 -0.1 3,056,962 + Shewana3_2554 0.89 -0.1 3,056,970 - +0.9 3,056,984 - -1.7 3,056,984 - -1.3 3,057,107 + +1.0 3,057,146 + -0.1 3,057,161 - -1.7 3,057,248 + -0.7 3,057,371 - +0.8 3,057,474 + Shewana3_2555 0.16 -0.1 3,057,540 + Shewana3_2555 0.30 +0.9 3,057,617 - Shewana3_2555 0.46 +2.4 3,057,701 - Shewana3_2555 0.63 +0.5 3,058,599 - -0.7
Or see this region's nucleotide sequence