Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2476

Experiment: 2-Furfuraldehyde 0.0625 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2475 and Shewana3_2476 are separated by 128 nucleotidesShewana3_2476 and Shewana3_2477 are separated by 287 nucleotidesShewana3_2477 and Shewana3_2478 are separated by 75 nucleotides Shewana3_2475: Shewana3_2475 - AMP-binding domain protein (RefSeq), at 2,961,380 to 2,963,104 _2475 Shewana3_2476: Shewana3_2476 - hypothetical protein (RefSeq), at 2,963,233 to 2,963,613 _2476 Shewana3_2477: Shewana3_2477 - hypothetical protein (RefSeq), at 2,963,901 to 2,964,362 _2477 Shewana3_2478: Shewana3_2478 - hypothetical protein (RefSeq), at 2,964,438 to 2,964,776 _2478 Position (kb) 2963 2964Strain fitness (log2 ratio) -2 -1 0 1at 2962.283 kb on + strand, within Shewana3_2475at 2962.291 kb on - strand, within Shewana3_2475at 2962.472 kb on - strand, within Shewana3_2475at 2962.630 kb on + strand, within Shewana3_2475at 2962.638 kb on - strand, within Shewana3_2475at 2962.638 kb on - strand, within Shewana3_2475at 2962.874 kb on + strand, within Shewana3_2475at 2962.963 kb on + strandat 2962.999 kb on + strandat 2963.218 kb on + strandat 2963.274 kb on + strand, within Shewana3_2476at 2963.282 kb on - strand, within Shewana3_2476at 2963.594 kb on - strandat 2963.740 kb on - strandat 2963.812 kb on + strandat 2963.959 kb on - strand, within Shewana3_2477at 2964.190 kb on + strand, within Shewana3_2477at 2964.198 kb on - strand, within Shewana3_2477at 2964.198 kb on - strand, within Shewana3_2477at 2964.295 kb on + strand, within Shewana3_2477at 2964.303 kb on - strand, within Shewana3_2477at 2964.303 kb on - strand, within Shewana3_2477at 2964.303 kb on - strand, within Shewana3_2477at 2964.303 kb on - strand, within Shewana3_2477at 2964.323 kb on - strandat 2964.363 kb on + strandat 2964.395 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
remove
2,962,283 + Shewana3_2475 0.52 -0.6
2,962,291 - Shewana3_2475 0.53 +0.9
2,962,472 - Shewana3_2475 0.63 -0.2
2,962,630 + Shewana3_2475 0.72 +0.3
2,962,638 - Shewana3_2475 0.73 +0.0
2,962,638 - Shewana3_2475 0.73 +0.9
2,962,874 + Shewana3_2475 0.87 -0.7
2,962,963 + -0.7
2,962,999 + -0.7
2,963,218 + +0.9
2,963,274 + Shewana3_2476 0.11 -0.4
2,963,282 - Shewana3_2476 0.13 -1.1
2,963,594 - -0.7
2,963,740 - +0.3
2,963,812 + -0.8
2,963,959 - Shewana3_2477 0.13 +1.3
2,964,190 + Shewana3_2477 0.63 -0.4
2,964,198 - Shewana3_2477 0.64 +0.7
2,964,198 - Shewana3_2477 0.64 +0.3
2,964,295 + Shewana3_2477 0.85 -1.1
2,964,303 - Shewana3_2477 0.87 -0.7
2,964,303 - Shewana3_2477 0.87 -1.9
2,964,303 - Shewana3_2477 0.87 -0.4
2,964,303 - Shewana3_2477 0.87 -0.1
2,964,323 - +0.3
2,964,363 + -0.2
2,964,395 + -1.1

Or see this region's nucleotide sequence