Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2475 and Shewana3_2476 are separated by 128 nucleotides Shewana3_2476 and Shewana3_2477 are separated by 287 nucleotides Shewana3_2477 and Shewana3_2478 are separated by 75 nucleotides
Shewana3_2475: Shewana3_2475 - AMP-binding domain protein (RefSeq), at 2,961,380 to 2,963,104
_2475
Shewana3_2476: Shewana3_2476 - hypothetical protein (RefSeq), at 2,963,233 to 2,963,613
_2476
Shewana3_2477: Shewana3_2477 - hypothetical protein (RefSeq), at 2,963,901 to 2,964,362
_2477
Shewana3_2478: Shewana3_2478 - hypothetical protein (RefSeq), at 2,964,438 to 2,964,776
_2478
Position (kb)
2963
2964 Strain fitness (log2 ratio)
-2
-1
0
1 at 2962.283 kb on + strand, within Shewana3_2475 at 2962.291 kb on - strand, within Shewana3_2475 at 2962.472 kb on - strand, within Shewana3_2475 at 2962.630 kb on + strand, within Shewana3_2475 at 2962.638 kb on - strand, within Shewana3_2475 at 2962.638 kb on - strand, within Shewana3_2475 at 2962.874 kb on + strand, within Shewana3_2475 at 2962.963 kb on + strand at 2962.999 kb on + strand at 2963.218 kb on + strand at 2963.274 kb on + strand, within Shewana3_2476 at 2963.282 kb on - strand, within Shewana3_2476 at 2963.594 kb on - strand at 2963.740 kb on - strand at 2963.812 kb on + strand at 2963.959 kb on - strand, within Shewana3_2477 at 2964.190 kb on + strand, within Shewana3_2477 at 2964.198 kb on - strand, within Shewana3_2477 at 2964.198 kb on - strand, within Shewana3_2477 at 2964.295 kb on + strand, within Shewana3_2477 at 2964.303 kb on - strand, within Shewana3_2477 at 2964.303 kb on - strand, within Shewana3_2477 at 2964.303 kb on - strand, within Shewana3_2477 at 2964.303 kb on - strand, within Shewana3_2477 at 2964.323 kb on - strand at 2964.363 kb on + strand at 2964.395 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,962,283 + Shewana3_2475 0.52 -0.6 2,962,291 - Shewana3_2475 0.53 +0.9 2,962,472 - Shewana3_2475 0.63 -0.2 2,962,630 + Shewana3_2475 0.72 +0.3 2,962,638 - Shewana3_2475 0.73 +0.0 2,962,638 - Shewana3_2475 0.73 +0.9 2,962,874 + Shewana3_2475 0.87 -0.7 2,962,963 + -0.7 2,962,999 + -0.7 2,963,218 + +0.9 2,963,274 + Shewana3_2476 0.11 -0.4 2,963,282 - Shewana3_2476 0.13 -1.1 2,963,594 - -0.7 2,963,740 - +0.3 2,963,812 + -0.8 2,963,959 - Shewana3_2477 0.13 +1.3 2,964,190 + Shewana3_2477 0.63 -0.4 2,964,198 - Shewana3_2477 0.64 +0.7 2,964,198 - Shewana3_2477 0.64 +0.3 2,964,295 + Shewana3_2477 0.85 -1.1 2,964,303 - Shewana3_2477 0.87 -0.7 2,964,303 - Shewana3_2477 0.87 -1.9 2,964,303 - Shewana3_2477 0.87 -0.4 2,964,303 - Shewana3_2477 0.87 -0.1 2,964,323 - +0.3 2,964,363 + -0.2 2,964,395 + -1.1
Or see this region's nucleotide sequence