Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2393

Experiment: 2-Furfuraldehyde 0.0625 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2392 and Shewana3_2393 are separated by 95 nucleotidesShewana3_2393 and Shewana3_2394 are separated by 377 nucleotides Shewana3_2392: Shewana3_2392 - delta-aminolevulinic acid dehydratase (RefSeq), at 2,870,854 to 2,871,852 _2392 Shewana3_2393: Shewana3_2393 - bifunctional methionine sulfoxide reductase B/A protein (RefSeq), at 2,871,948 to 2,872,853 _2393 Shewana3_2394: Shewana3_2394 - 2OG-Fe(II) oxygenase (RefSeq), at 2,873,231 to 2,874,070 _2394 Position (kb) 2871 2872 2873Strain fitness (log2 ratio) -1 0 1 2at 2871.133 kb on + strand, within Shewana3_2392at 2871.171 kb on - strand, within Shewana3_2392at 2871.251 kb on + strand, within Shewana3_2392at 2871.276 kb on - strand, within Shewana3_2392at 2871.350 kb on - strand, within Shewana3_2392at 2871.395 kb on - strand, within Shewana3_2392at 2871.395 kb on - strand, within Shewana3_2392at 2871.527 kb on - strand, within Shewana3_2392at 2871.527 kb on - strand, within Shewana3_2392at 2871.940 kb on + strandat 2871.948 kb on - strandat 2872.119 kb on - strand, within Shewana3_2393at 2872.416 kb on - strand, within Shewana3_2393at 2872.462 kb on - strand, within Shewana3_2393at 2872.614 kb on - strand, within Shewana3_2393at 2872.774 kb on + strandat 2872.929 kb on + strandat 2873.040 kb on + strandat 2873.058 kb on + strandat 2873.129 kb on + strandat 2873.136 kb on - strandat 2873.176 kb on + strandat 2873.269 kb on - strandat 2873.342 kb on - strand, within Shewana3_2394at 2873.361 kb on - strand, within Shewana3_2394at 2873.472 kb on + strand, within Shewana3_2394at 2873.499 kb on - strand, within Shewana3_2394at 2873.700 kb on - strand, within Shewana3_2394at 2873.753 kb on + strand, within Shewana3_2394at 2873.769 kb on - strand, within Shewana3_2394at 2873.790 kb on + strand, within Shewana3_2394at 2873.810 kb on + strand, within Shewana3_2394

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
remove
2,871,133 + Shewana3_2392 0.28 -0.8
2,871,171 - Shewana3_2392 0.32 +1.9
2,871,251 + Shewana3_2392 0.40 -0.6
2,871,276 - Shewana3_2392 0.42 -1.1
2,871,350 - Shewana3_2392 0.50 +1.2
2,871,395 - Shewana3_2392 0.54 -1.1
2,871,395 - Shewana3_2392 0.54 -1.4
2,871,527 - Shewana3_2392 0.67 -0.3
2,871,527 - Shewana3_2392 0.67 +0.4
2,871,940 + +0.0
2,871,948 - +1.9
2,872,119 - Shewana3_2393 0.19 -0.3
2,872,416 - Shewana3_2393 0.52 +0.5
2,872,462 - Shewana3_2393 0.57 +0.9
2,872,614 - Shewana3_2393 0.74 +0.9
2,872,774 + +0.5
2,872,929 + +0.3
2,873,040 + +0.6
2,873,058 + +0.4
2,873,129 + -0.7
2,873,136 - -0.9
2,873,176 + -0.2
2,873,269 - -0.4
2,873,342 - Shewana3_2394 0.13 +0.5
2,873,361 - Shewana3_2394 0.15 +0.5
2,873,472 + Shewana3_2394 0.29 -1.7
2,873,499 - Shewana3_2394 0.32 -0.4
2,873,700 - Shewana3_2394 0.56 +0.9
2,873,753 + Shewana3_2394 0.62 +1.6
2,873,769 - Shewana3_2394 0.64 -0.1
2,873,790 + Shewana3_2394 0.67 -0.9
2,873,810 + Shewana3_2394 0.69 +0.4

Or see this region's nucleotide sequence