Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2362 and Shewana3_2363 are separated by 24 nucleotides Shewana3_2363 and Shewana3_R0100 are separated by 282 nucleotides Shewana3_R0100 and Shewana3_R0101 are separated by 56 nucleotides Shewana3_R0101 and Shewana3_2364 are separated by 165 nucleotides
Shewana3_2362: Shewana3_2362 - NnrS family protein (RefSeq), at 2,839,141 to 2,840,352
_2362
Shewana3_2363: Shewana3_2363 - cytochrome c552 (RefSeq), at 2,840,377 to 2,841,810
_2363
Shewana3_R0100: Shewana3_R0100 - tRNA-Asp (RefSeq), at 2,842,093 to 2,842,169
_R0100
Shewana3_R0101: Shewana3_R0101 - tRNA-Asp (RefSeq), at 2,842,226 to 2,842,302
_R0101
Shewana3_2364: Shewana3_2364 - hypothetical protein (RefSeq), at 2,842,468 to 2,843,652
_2364
Position (kb)
2840
2841
2842 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2839.564 kb on - strand, within Shewana3_2362 at 2839.854 kb on - strand, within Shewana3_2362 at 2839.856 kb on + strand, within Shewana3_2362 at 2839.909 kb on - strand, within Shewana3_2362 at 2839.991 kb on + strand, within Shewana3_2362 at 2840.059 kb on + strand, within Shewana3_2362 at 2840.202 kb on + strand, within Shewana3_2362 at 2840.304 kb on + strand at 2840.314 kb on + strand at 2840.579 kb on - strand, within Shewana3_2363 at 2840.663 kb on - strand, within Shewana3_2363 at 2840.668 kb on + strand, within Shewana3_2363 at 2840.712 kb on + strand, within Shewana3_2363 at 2840.712 kb on + strand, within Shewana3_2363 at 2840.714 kb on + strand, within Shewana3_2363 at 2840.714 kb on + strand, within Shewana3_2363 at 2840.739 kb on + strand, within Shewana3_2363 at 2840.806 kb on - strand, within Shewana3_2363 at 2840.891 kb on - strand, within Shewana3_2363 at 2840.920 kb on - strand, within Shewana3_2363 at 2841.444 kb on - strand, within Shewana3_2363 at 2841.602 kb on + strand, within Shewana3_2363 at 2841.620 kb on - strand, within Shewana3_2363 at 2841.856 kb on + strand at 2842.574 kb on - strand at 2842.755 kb on + strand, within Shewana3_2364
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,839,564 - Shewana3_2362 0.35 +0.9 2,839,854 - Shewana3_2362 0.59 -0.9 2,839,856 + Shewana3_2362 0.59 +0.9 2,839,909 - Shewana3_2362 0.63 +0.9 2,839,991 + Shewana3_2362 0.70 -1.9 2,840,059 + Shewana3_2362 0.76 +0.3 2,840,202 + Shewana3_2362 0.88 -0.8 2,840,304 + +0.3 2,840,314 + -0.3 2,840,579 - Shewana3_2363 0.14 +0.9 2,840,663 - Shewana3_2363 0.20 +0.9 2,840,668 + Shewana3_2363 0.20 -1.2 2,840,712 + Shewana3_2363 0.23 -0.7 2,840,712 + Shewana3_2363 0.23 -0.1 2,840,714 + Shewana3_2363 0.24 +1.9 2,840,714 + Shewana3_2363 0.24 -1.1 2,840,739 + Shewana3_2363 0.25 -1.1 2,840,806 - Shewana3_2363 0.30 -0.9 2,840,891 - Shewana3_2363 0.36 +1.3 2,840,920 - Shewana3_2363 0.38 -1.1 2,841,444 - Shewana3_2363 0.74 -0.9 2,841,602 + Shewana3_2363 0.85 +0.9 2,841,620 - Shewana3_2363 0.87 +0.9 2,841,856 + -0.1 2,842,574 - +0.4 2,842,755 + Shewana3_2364 0.24 +1.9
Or see this region's nucleotide sequence