Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2352 and Shewana3_2353 overlap by 1 nucleotides Shewana3_2353 and Shewana3_2354 overlap by 16 nucleotides
Shewana3_2352: Shewana3_2352 - hypothetical protein (RefSeq), at 2,829,036 to 2,829,650
_2352
Shewana3_2353: Shewana3_2353 - hypothetical protein (RefSeq), at 2,829,650 to 2,831,923
_2353
Shewana3_2354: Shewana3_2354 - phage integrase family protein (RefSeq), at 2,831,908 to 2,835,000
_2354
Position (kb)
2829
2830
2831
2832 Strain fitness (log2 ratio)
-1
0
1
2 at 2828.653 kb on + strand at 2828.661 kb on - strand at 2828.661 kb on - strand at 2828.698 kb on - strand at 2828.812 kb on + strand at 2828.822 kb on + strand at 2828.841 kb on - strand at 2828.886 kb on + strand at 2829.088 kb on - strand at 2829.260 kb on + strand, within Shewana3_2352 at 2829.311 kb on + strand, within Shewana3_2352 at 2829.407 kb on - strand, within Shewana3_2352 at 2829.652 kb on + strand at 2829.754 kb on - strand at 2830.249 kb on - strand, within Shewana3_2353 at 2830.359 kb on + strand, within Shewana3_2353 at 2830.521 kb on + strand, within Shewana3_2353 at 2830.521 kb on + strand, within Shewana3_2353 at 2830.531 kb on + strand, within Shewana3_2353 at 2830.539 kb on - strand, within Shewana3_2353 at 2830.539 kb on - strand, within Shewana3_2353 at 2830.539 kb on - strand, within Shewana3_2353 at 2830.962 kb on - strand, within Shewana3_2353 at 2831.074 kb on - strand, within Shewana3_2353 at 2831.199 kb on + strand, within Shewana3_2353 at 2831.412 kb on - strand, within Shewana3_2353 at 2831.476 kb on - strand, within Shewana3_2353 at 2831.695 kb on + strand, within Shewana3_2353 at 2831.700 kb on + strand at 2831.978 kb on - strand at 2832.062 kb on - strand at 2832.062 kb on - strand at 2832.074 kb on - strand at 2832.238 kb on - strand, within Shewana3_2354 at 2832.438 kb on - strand, within Shewana3_2354 at 2832.519 kb on + strand, within Shewana3_2354 at 2832.549 kb on + strand, within Shewana3_2354 at 2832.593 kb on + strand, within Shewana3_2354 at 2832.627 kb on + strand, within Shewana3_2354 at 2832.750 kb on + strand, within Shewana3_2354 at 2832.750 kb on + strand, within Shewana3_2354 at 2832.758 kb on - strand, within Shewana3_2354 at 2832.824 kb on - strand, within Shewana3_2354
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,828,653 + -0.0 2,828,661 - -0.6 2,828,661 - +0.4 2,828,698 - -0.0 2,828,812 + -0.0 2,828,822 + -0.1 2,828,841 - +2.0 2,828,886 + -0.4 2,829,088 - +1.0 2,829,260 + Shewana3_2352 0.36 -0.9 2,829,311 + Shewana3_2352 0.45 -0.3 2,829,407 - Shewana3_2352 0.60 +1.0 2,829,652 + +0.4 2,829,754 - +2.0 2,830,249 - Shewana3_2353 0.26 -0.0 2,830,359 + Shewana3_2353 0.31 -1.2 2,830,521 + Shewana3_2353 0.38 -0.0 2,830,521 + Shewana3_2353 0.38 +1.0 2,830,531 + Shewana3_2353 0.39 -1.6 2,830,539 - Shewana3_2353 0.39 -1.4 2,830,539 - Shewana3_2353 0.39 +1.0 2,830,539 - Shewana3_2353 0.39 +2.0 2,830,962 - Shewana3_2353 0.58 -0.0 2,831,074 - Shewana3_2353 0.63 -1.2 2,831,199 + Shewana3_2353 0.68 +0.2 2,831,412 - Shewana3_2353 0.77 +0.4 2,831,476 - Shewana3_2353 0.80 -0.2 2,831,695 + Shewana3_2353 0.90 +0.6 2,831,700 + +0.4 2,831,978 - -0.6 2,832,062 - -0.9 2,832,062 - -0.9 2,832,074 - +0.4 2,832,238 - Shewana3_2354 0.11 -0.4 2,832,438 - Shewana3_2354 0.17 +2.0 2,832,519 + Shewana3_2354 0.20 +0.4 2,832,549 + Shewana3_2354 0.21 +0.5 2,832,593 + Shewana3_2354 0.22 +1.5 2,832,627 + Shewana3_2354 0.23 -0.4 2,832,750 + Shewana3_2354 0.27 -0.4 2,832,750 + Shewana3_2354 0.27 -0.7 2,832,758 - Shewana3_2354 0.27 +0.4 2,832,824 - Shewana3_2354 0.30 +0.0
Or see this region's nucleotide sequence