Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2346

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2344 and Shewana3_2345 are separated by 120 nucleotidesShewana3_2345 and Shewana3_2346 are separated by 113 nucleotidesShewana3_2346 and Shewana3_2347 overlap by 4 nucleotides Shewana3_2344: Shewana3_2344 - arsenical pump membrane protein (RefSeq), at 2,820,383 to 2,821,666 _2344 Shewana3_2345: Shewana3_2345 - arsenate reductase (RefSeq), at 2,821,787 to 2,822,263 _2345 Shewana3_2346: Shewana3_2346 - acriflavin resistance protein (RefSeq), at 2,822,377 to 2,825,451 _2346 Shewana3_2347: Shewana3_2347 - RND family efflux transporter MFP subunit (RefSeq), at 2,825,448 to 2,826,572 _2347 Position (kb) 2822 2823 2824 2825 2826Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2821.465 kb on + strand, within Shewana3_2344at 2821.640 kb on - strandat 2821.812 kb on - strandat 2821.850 kb on - strand, within Shewana3_2345at 2821.869 kb on + strand, within Shewana3_2345at 2822.036 kb on + strand, within Shewana3_2345at 2822.140 kb on - strand, within Shewana3_2345at 2822.327 kb on - strandat 2822.527 kb on + strandat 2822.549 kb on - strandat 2822.601 kb on - strandat 2822.693 kb on - strand, within Shewana3_2346at 2822.866 kb on + strand, within Shewana3_2346at 2822.874 kb on - strand, within Shewana3_2346at 2823.096 kb on - strand, within Shewana3_2346at 2823.537 kb on + strand, within Shewana3_2346at 2823.901 kb on + strand, within Shewana3_2346at 2823.915 kb on + strand, within Shewana3_2346at 2824.211 kb on - strand, within Shewana3_2346at 2824.354 kb on + strand, within Shewana3_2346at 2824.691 kb on - strand, within Shewana3_2346at 2824.737 kb on - strand, within Shewana3_2346at 2824.857 kb on + strand, within Shewana3_2346at 2824.857 kb on + strand, within Shewana3_2346at 2824.865 kb on - strand, within Shewana3_2346at 2824.914 kb on + strandat 2824.920 kb on - strand, within Shewana3_2346at 2825.052 kb on - strand, within Shewana3_2346at 2825.202 kb on - strandat 2825.202 kb on - strandat 2825.237 kb on - strandat 2825.240 kb on - strandat 2825.586 kb on + strand, within Shewana3_2347at 2825.591 kb on + strand, within Shewana3_2347at 2826.034 kb on + strand, within Shewana3_2347at 2826.069 kb on + strand, within Shewana3_2347at 2826.069 kb on + strand, within Shewana3_2347at 2826.102 kb on - strand, within Shewana3_2347at 2826.292 kb on - strand, within Shewana3_2347at 2826.317 kb on + strand, within Shewana3_2347

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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2,821,465 + Shewana3_2344 0.84 +0.0
2,821,640 - -0.5
2,821,812 - +0.0
2,821,850 - Shewana3_2345 0.13 -0.1
2,821,869 + Shewana3_2345 0.17 -0.3
2,822,036 + Shewana3_2345 0.52 +0.3
2,822,140 - Shewana3_2345 0.74 +2.0
2,822,327 - -2.0
2,822,527 + +1.0
2,822,549 - -2.0
2,822,601 - -0.0
2,822,693 - Shewana3_2346 0.10 +1.0
2,822,866 + Shewana3_2346 0.16 -0.4
2,822,874 - Shewana3_2346 0.16 -3.2
2,823,096 - Shewana3_2346 0.23 +0.4
2,823,537 + Shewana3_2346 0.38 -0.1
2,823,901 + Shewana3_2346 0.50 +0.4
2,823,915 + Shewana3_2346 0.50 +0.4
2,824,211 - Shewana3_2346 0.60 +0.6
2,824,354 + Shewana3_2346 0.64 +1.0
2,824,691 - Shewana3_2346 0.75 -0.4
2,824,737 - Shewana3_2346 0.77 +0.4
2,824,857 + Shewana3_2346 0.81 -1.0
2,824,857 + Shewana3_2346 0.81 -0.8
2,824,865 - Shewana3_2346 0.81 +1.0
2,824,914 + +1.0
2,824,920 - Shewana3_2346 0.83 +2.0
2,825,052 - Shewana3_2346 0.87 -0.8
2,825,202 - +2.0
2,825,202 - -0.0
2,825,237 - -0.4
2,825,240 - +1.0
2,825,586 + Shewana3_2347 0.12 +2.0
2,825,591 + Shewana3_2347 0.13 -1.4
2,826,034 + Shewana3_2347 0.52 +0.4
2,826,069 + Shewana3_2347 0.55 -1.1
2,826,069 + Shewana3_2347 0.55 -0.4
2,826,102 - Shewana3_2347 0.58 -1.2
2,826,292 - Shewana3_2347 0.75 -1.2
2,826,317 + Shewana3_2347 0.77 +1.0

Or see this region's nucleotide sequence