Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2342

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2341 and Shewana3_2342 are separated by 364 nucleotidesShewana3_2342 and Shewana3_2343 are separated by 22 nucleotides Shewana3_2341: Shewana3_2341 - molybdopterin oxidoreductase (RefSeq), at 2,815,232 to 2,817,796 _2341 Shewana3_2342: Shewana3_2342 - arsenical resistance operon trans-acting repressor ArsD (RefSeq), at 2,818,161 to 2,818,523 _2342 Shewana3_2343: Shewana3_2343 - arsenite-activated ATPase ArsA (RefSeq), at 2,818,546 to 2,820,312 _2343 Position (kb) 2818 2819Strain fitness (log2 ratio) -1 0 1at 2817.524 kb on - strand, within Shewana3_2341at 2817.576 kb on + strandat 2817.648 kb on - strandat 2817.701 kb on + strandat 2817.742 kb on + strandat 2817.755 kb on + strandat 2817.764 kb on - strandat 2817.988 kb on + strandat 2818.209 kb on - strand, within Shewana3_2342at 2818.287 kb on - strand, within Shewana3_2342at 2818.373 kb on + strand, within Shewana3_2342at 2818.373 kb on + strand, within Shewana3_2342at 2818.668 kb on + strandat 2818.721 kb on - strandat 2818.800 kb on - strand, within Shewana3_2343at 2818.856 kb on + strand, within Shewana3_2343at 2818.991 kb on - strand, within Shewana3_2343at 2819.109 kb on + strand, within Shewana3_2343at 2819.114 kb on + strand, within Shewana3_2343at 2819.117 kb on - strand, within Shewana3_2343

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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2,817,524 - Shewana3_2341 0.89 +0.4
2,817,576 + +0.4
2,817,648 - -1.6
2,817,701 + -0.2
2,817,742 + -1.3
2,817,755 + -0.1
2,817,764 - -1.1
2,817,988 + +0.1
2,818,209 - Shewana3_2342 0.13 +1.0
2,818,287 - Shewana3_2342 0.35 -0.6
2,818,373 + Shewana3_2342 0.58 -1.5
2,818,373 + Shewana3_2342 0.58 +0.4
2,818,668 + -0.5
2,818,721 - +0.4
2,818,800 - Shewana3_2343 0.14 -1.7
2,818,856 + Shewana3_2343 0.18 -0.3
2,818,991 - Shewana3_2343 0.25 +1.2
2,819,109 + Shewana3_2343 0.32 -0.3
2,819,114 + Shewana3_2343 0.32 -0.2
2,819,117 - Shewana3_2343 0.32 -1.2

Or see this region's nucleotide sequence