Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2330 and Shewana3_2331 are separated by 74 nucleotides Shewana3_2331 and Shewana3_2332 are separated by 6 nucleotides Shewana3_2332 and Shewana3_2333 are separated by 10 nucleotides Shewana3_2333 and Shewana3_2334 are separated by 96 nucleotides Shewana3_2334 and Shewana3_2335 are separated by 78 nucleotides
Shewana3_2330: Shewana3_2330 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,806,888 to 2,807,898
_2330
Shewana3_2331: Shewana3_2331 - protein tyrosine phosphatase, catalytic region (RefSeq), at 2,807,973 to 2,808,464
_2331
Shewana3_2332: Shewana3_2332 - redox-active disulfide protein 2 (RefSeq), at 2,808,471 to 2,808,707
_2332
Shewana3_2333: Shewana3_2333 - permease (RefSeq), at 2,808,718 to 2,809,716
_2333
Shewana3_2334: Shewana3_2334 - protein tyrosine phosphatase (RefSeq), at 2,809,813 to 2,810,319
_2334
Shewana3_2335: Shewana3_2335 - ArsR family transcriptional regulator (RefSeq), at 2,810,398 to 2,810,745
_2335
Position (kb)
2808
2809
2810 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2807.740 kb on + strand at 2807.847 kb on + strand at 2807.855 kb on - strand at 2808.121 kb on - strand, within Shewana3_2331 at 2808.203 kb on - strand, within Shewana3_2331 at 2808.203 kb on - strand, within Shewana3_2331 at 2808.293 kb on + strand, within Shewana3_2331 at 2808.293 kb on + strand, within Shewana3_2331 at 2808.293 kb on + strand, within Shewana3_2331 at 2808.567 kb on + strand, within Shewana3_2332 at 2808.666 kb on - strand, within Shewana3_2332 at 2808.996 kb on - strand, within Shewana3_2333 at 2809.454 kb on - strand, within Shewana3_2333 at 2809.792 kb on + strand at 2809.792 kb on + strand at 2809.800 kb on - strand at 2809.891 kb on + strand at 2810.003 kb on - strand, within Shewana3_2334 at 2810.161 kb on + strand, within Shewana3_2334 at 2810.180 kb on - strand, within Shewana3_2334 at 2810.667 kb on - strand, within Shewana3_2335
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,807,740 + +2.0 2,807,847 + -0.0 2,807,855 - +4.0 2,808,121 - Shewana3_2331 0.30 -0.6 2,808,203 - Shewana3_2331 0.47 +0.2 2,808,203 - Shewana3_2331 0.47 -2.0 2,808,293 + Shewana3_2331 0.65 -0.0 2,808,293 + Shewana3_2331 0.65 +2.0 2,808,293 + Shewana3_2331 0.65 -0.4 2,808,567 + Shewana3_2332 0.41 -0.0 2,808,666 - Shewana3_2332 0.82 +1.0 2,808,996 - Shewana3_2333 0.28 +1.3 2,809,454 - Shewana3_2333 0.74 +1.6 2,809,792 + +2.0 2,809,792 + +0.4 2,809,800 - -0.3 2,809,891 + +0.4 2,810,003 - Shewana3_2334 0.37 -1.1 2,810,161 + Shewana3_2334 0.69 +0.4 2,810,180 - Shewana3_2334 0.72 +0.6 2,810,667 - Shewana3_2335 0.77 +0.7
Or see this region's nucleotide sequence