Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2327 and Shewana3_2328 are separated by 309 nucleotides Shewana3_2328 and Shewana3_2329 are separated by 132 nucleotides Shewana3_2329 and Shewana3_2330 are separated by 23 nucleotides
Shewana3_2327: Shewana3_2327 - transcriptional regulator (RefSeq), at 2,803,958 to 2,804,908
_2327
Shewana3_2328: Shewana3_2328 - hypothetical protein (RefSeq), at 2,805,218 to 2,805,493
_2328
Shewana3_2329: Shewana3_2329 - major facilitator transporter (RefSeq), at 2,805,626 to 2,806,864
_2329
Shewana3_2330: Shewana3_2330 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,806,888 to 2,807,898
_2330
Position (kb)
2805
2806
2807 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2804.778 kb on + strand, within Shewana3_2327 at 2805.300 kb on - strand, within Shewana3_2328 at 2805.305 kb on - strand, within Shewana3_2328 at 2805.549 kb on - strand at 2805.742 kb on + strand at 2805.750 kb on - strand, within Shewana3_2329 at 2805.888 kb on - strand, within Shewana3_2329 at 2805.924 kb on + strand, within Shewana3_2329 at 2805.989 kb on - strand, within Shewana3_2329 at 2806.046 kb on + strand, within Shewana3_2329 at 2806.054 kb on - strand, within Shewana3_2329 at 2806.054 kb on - strand, within Shewana3_2329 at 2806.054 kb on - strand, within Shewana3_2329 at 2806.066 kb on + strand, within Shewana3_2329 at 2806.439 kb on + strand, within Shewana3_2329 at 2806.520 kb on + strand, within Shewana3_2329 at 2806.553 kb on - strand, within Shewana3_2329 at 2806.647 kb on - strand, within Shewana3_2329 at 2806.723 kb on + strand, within Shewana3_2329 at 2806.726 kb on - strand, within Shewana3_2329 at 2806.731 kb on - strand, within Shewana3_2329 at 2806.940 kb on + strand at 2806.973 kb on + strand at 2806.981 kb on - strand at 2807.302 kb on - strand, within Shewana3_2330 at 2807.442 kb on - strand, within Shewana3_2330 at 2807.449 kb on - strand, within Shewana3_2330 at 2807.522 kb on + strand, within Shewana3_2330 at 2807.668 kb on - strand, within Shewana3_2330 at 2807.740 kb on + strand at 2807.847 kb on + strand at 2807.855 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,804,778 + Shewana3_2327 0.86 +2.0 2,805,300 - Shewana3_2328 0.30 +0.4 2,805,305 - Shewana3_2328 0.32 -0.5 2,805,549 - -0.3 2,805,742 + +1.0 2,805,750 - Shewana3_2329 0.10 -1.2 2,805,888 - Shewana3_2329 0.21 +0.5 2,805,924 + Shewana3_2329 0.24 -0.0 2,805,989 - Shewana3_2329 0.29 +0.4 2,806,046 + Shewana3_2329 0.34 +1.0 2,806,054 - Shewana3_2329 0.35 +0.4 2,806,054 - Shewana3_2329 0.35 +0.4 2,806,054 - Shewana3_2329 0.35 +0.2 2,806,066 + Shewana3_2329 0.36 +2.0 2,806,439 + Shewana3_2329 0.66 +2.0 2,806,520 + Shewana3_2329 0.72 -0.0 2,806,553 - Shewana3_2329 0.75 +0.4 2,806,647 - Shewana3_2329 0.82 +0.8 2,806,723 + Shewana3_2329 0.89 +2.0 2,806,726 - Shewana3_2329 0.89 +0.7 2,806,731 - Shewana3_2329 0.89 +0.2 2,806,940 + -0.6 2,806,973 + -1.0 2,806,981 - -0.8 2,807,302 - Shewana3_2330 0.41 +0.7 2,807,442 - Shewana3_2330 0.55 -0.2 2,807,449 - Shewana3_2330 0.55 -1.0 2,807,522 + Shewana3_2330 0.63 +2.0 2,807,668 - Shewana3_2330 0.77 -0.7 2,807,740 + +2.0 2,807,847 + -0.0 2,807,855 - +4.0
Or see this region's nucleotide sequence