Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2310 and Shewana3_2311 are separated by 125 nucleotides Shewana3_2311 and Shewana3_2312 are separated by 498 nucleotides
Shewana3_2310: Shewana3_2310 - glucose/galactose transporter (RefSeq), at 2,777,055 to 2,778,326
_2310
Shewana3_2311: Shewana3_2311 - Alpha-glucosidase (EC 3.2.1.20) (from data) , at 2,778,452 to 2,780,074
_2311
Shewana3_2312: Shewana3_2312 - 1-(5-phosphoribosyl)-5- (RefSeq), at 2,780,573 to 2,783,398
_2312
Position (kb)
2778
2779
2780
2781 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2777.468 kb on - strand, within Shewana3_2310 at 2777.493 kb on + strand, within Shewana3_2310 at 2777.582 kb on - strand, within Shewana3_2310 at 2777.704 kb on - strand, within Shewana3_2310 at 2777.768 kb on - strand, within Shewana3_2310 at 2777.768 kb on - strand, within Shewana3_2310 at 2777.802 kb on + strand, within Shewana3_2310 at 2777.892 kb on + strand, within Shewana3_2310 at 2777.928 kb on - strand, within Shewana3_2310 at 2777.972 kb on + strand, within Shewana3_2310 at 2778.036 kb on + strand, within Shewana3_2310 at 2778.321 kb on + strand at 2778.433 kb on + strand at 2778.433 kb on + strand at 2778.433 kb on + strand at 2778.441 kb on - strand at 2778.441 kb on - strand at 2778.602 kb on + strand at 2778.635 kb on + strand, within Shewana3_2311 at 2778.649 kb on - strand, within Shewana3_2311 at 2778.658 kb on - strand, within Shewana3_2311 at 2778.856 kb on + strand, within Shewana3_2311 at 2778.995 kb on - strand, within Shewana3_2311 at 2779.169 kb on - strand, within Shewana3_2311 at 2779.191 kb on + strand, within Shewana3_2311 at 2779.442 kb on - strand, within Shewana3_2311 at 2779.528 kb on - strand, within Shewana3_2311 at 2779.844 kb on + strand, within Shewana3_2311 at 2780.254 kb on - strand at 2780.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,777,468 - Shewana3_2310 0.32 -0.2 2,777,493 + Shewana3_2310 0.34 +2.0 2,777,582 - Shewana3_2310 0.41 +0.1 2,777,704 - Shewana3_2310 0.51 +0.4 2,777,768 - Shewana3_2310 0.56 +0.8 2,777,768 - Shewana3_2310 0.56 +0.6 2,777,802 + Shewana3_2310 0.59 -0.8 2,777,892 + Shewana3_2310 0.66 +1.0 2,777,928 - Shewana3_2310 0.69 -0.6 2,777,972 + Shewana3_2310 0.72 +0.4 2,778,036 + Shewana3_2310 0.77 -0.7 2,778,321 + -0.2 2,778,433 + -0.8 2,778,433 + -0.3 2,778,433 + +0.3 2,778,441 - +1.0 2,778,441 - -0.8 2,778,602 + +1.2 2,778,635 + Shewana3_2311 0.11 -0.0 2,778,649 - Shewana3_2311 0.12 -0.2 2,778,658 - Shewana3_2311 0.13 -0.0 2,778,856 + Shewana3_2311 0.25 +0.3 2,778,995 - Shewana3_2311 0.33 +0.6 2,779,169 - Shewana3_2311 0.44 -1.5 2,779,191 + Shewana3_2311 0.46 +0.1 2,779,442 - Shewana3_2311 0.61 -2.1 2,779,528 - Shewana3_2311 0.66 -1.2 2,779,844 + Shewana3_2311 0.86 +1.0 2,780,254 - -0.1 2,780,367 - +1.4
Or see this region's nucleotide sequence