Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2292 and Shewana3_2293 are separated by 81 nucleotides Shewana3_2293 and Shewana3_2294 are separated by 104 nucleotides Shewana3_2294 and Shewana3_2295 overlap by 8 nucleotides
Shewana3_2292: Shewana3_2292 - hypothetical protein (RefSeq), at 2,756,429 to 2,756,968
_2292
Shewana3_2293: Shewana3_2293 - beta-hexosaminidase (RefSeq), at 2,757,050 to 2,758,078
_2293
Shewana3_2294: Shewana3_2294 - hypothetical protein (RefSeq), at 2,758,183 to 2,758,470
_2294
Shewana3_2295: Shewana3_2295 - L-serine ammonia-lyase (RefSeq), at 2,758,463 to 2,759,839
_2295
Position (kb)
2757
2758
2759 Strain fitness (log2 ratio)
-1
0
1
2 at 2756.335 kb on + strand at 2756.581 kb on - strand, within Shewana3_2292 at 2756.713 kb on - strand, within Shewana3_2292 at 2756.748 kb on + strand, within Shewana3_2292 at 2756.756 kb on - strand, within Shewana3_2292 at 2756.841 kb on + strand, within Shewana3_2292 at 2756.862 kb on + strand, within Shewana3_2292 at 2757.007 kb on + strand at 2757.364 kb on - strand, within Shewana3_2293 at 2757.428 kb on - strand, within Shewana3_2293 at 2757.577 kb on - strand, within Shewana3_2293 at 2757.625 kb on + strand, within Shewana3_2293 at 2757.702 kb on - strand, within Shewana3_2293 at 2757.728 kb on + strand, within Shewana3_2293 at 2757.890 kb on + strand, within Shewana3_2293 at 2758.050 kb on - strand at 2758.141 kb on - strand at 2758.607 kb on - strand, within Shewana3_2295 at 2758.617 kb on - strand, within Shewana3_2295 at 2758.754 kb on - strand, within Shewana3_2295 at 2758.759 kb on - strand, within Shewana3_2295 at 2759.061 kb on + strand, within Shewana3_2295
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,756,335 + +1.0 2,756,581 - Shewana3_2292 0.28 -0.2 2,756,713 - Shewana3_2292 0.53 -0.6 2,756,748 + Shewana3_2292 0.59 -0.8 2,756,756 - Shewana3_2292 0.61 -0.3 2,756,841 + Shewana3_2292 0.76 +1.0 2,756,862 + Shewana3_2292 0.80 -0.3 2,757,007 + +2.0 2,757,364 - Shewana3_2293 0.31 +0.8 2,757,428 - Shewana3_2293 0.37 +0.6 2,757,577 - Shewana3_2293 0.51 +0.4 2,757,625 + Shewana3_2293 0.56 +1.0 2,757,702 - Shewana3_2293 0.63 +2.0 2,757,728 + Shewana3_2293 0.66 +2.0 2,757,890 + Shewana3_2293 0.82 +1.0 2,758,050 - +1.0 2,758,141 - +0.0 2,758,607 - Shewana3_2295 0.10 -0.7 2,758,617 - Shewana3_2295 0.11 +2.0 2,758,754 - Shewana3_2295 0.21 -1.0 2,758,759 - Shewana3_2295 0.21 +1.0 2,759,061 + Shewana3_2295 0.43 -1.1
Or see this region's nucleotide sequence