Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2238 and Shewana3_2239 are separated by 126 nucleotides Shewana3_2239 and Shewana3_2240 are separated by 75 nucleotides Shewana3_2240 and Shewana3_2241 are separated by 590 nucleotides
Shewana3_2238: Shewana3_2238 - hypothetical protein (RefSeq), at 2,692,598 to 2,692,966
_2238
Shewana3_2239: Shewana3_2239 - GCN5-related N-acetyltransferase (RefSeq), at 2,693,093 to 2,693,545
_2239
Shewana3_2240: Shewana3_2240 - hypothetical protein (RefSeq), at 2,693,621 to 2,694,487
_2240
Shewana3_2241: Shewana3_2241 - hypothetical protein (RefSeq), at 2,695,078 to 2,695,512
_2241
Position (kb)
2693
2694
2695 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2692.849 kb on + strand, within Shewana3_2238 at 2692.873 kb on - strand, within Shewana3_2238 at 2692.915 kb on + strand, within Shewana3_2238 at 2692.937 kb on + strand at 2693.018 kb on + strand at 2693.072 kb on + strand at 2693.284 kb on + strand, within Shewana3_2239 at 2693.284 kb on + strand, within Shewana3_2239 at 2693.284 kb on + strand, within Shewana3_2239 at 2693.284 kb on + strand, within Shewana3_2239 at 2693.292 kb on - strand, within Shewana3_2239 at 2693.292 kb on - strand, within Shewana3_2239 at 2693.448 kb on - strand, within Shewana3_2239 at 2693.508 kb on + strand at 2693.552 kb on + strand at 2693.812 kb on + strand, within Shewana3_2240 at 2693.995 kb on + strand, within Shewana3_2240 at 2694.096 kb on - strand, within Shewana3_2240 at 2694.179 kb on + strand, within Shewana3_2240 at 2694.188 kb on + strand, within Shewana3_2240 at 2694.456 kb on - strand at 2694.539 kb on + strand at 2694.539 kb on + strand at 2694.547 kb on - strand at 2694.616 kb on - strand at 2694.689 kb on + strand at 2694.689 kb on + strand at 2694.697 kb on - strand at 2694.697 kb on - strand at 2694.697 kb on - strand at 2694.697 kb on - strand at 2694.805 kb on - strand at 2694.953 kb on - strand at 2694.970 kb on + strand at 2695.056 kb on + strand at 2695.336 kb on - strand, within Shewana3_2241 at 2695.385 kb on + strand, within Shewana3_2241 at 2695.394 kb on + strand, within Shewana3_2241
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,692,849 + Shewana3_2238 0.68 -1.1 2,692,873 - Shewana3_2238 0.75 +0.4 2,692,915 + Shewana3_2238 0.86 -1.9 2,692,937 + -0.3 2,693,018 + -0.3 2,693,072 + +0.2 2,693,284 + Shewana3_2239 0.42 +0.0 2,693,284 + Shewana3_2239 0.42 -0.5 2,693,284 + Shewana3_2239 0.42 -0.1 2,693,284 + Shewana3_2239 0.42 -1.1 2,693,292 - Shewana3_2239 0.44 +2.0 2,693,292 - Shewana3_2239 0.44 +1.3 2,693,448 - Shewana3_2239 0.78 +2.0 2,693,508 + +0.7 2,693,552 + -1.6 2,693,812 + Shewana3_2240 0.22 +1.0 2,693,995 + Shewana3_2240 0.43 -0.6 2,694,096 - Shewana3_2240 0.55 +1.0 2,694,179 + Shewana3_2240 0.64 -1.5 2,694,188 + Shewana3_2240 0.65 -0.3 2,694,456 - -1.3 2,694,539 + +0.0 2,694,539 + +0.6 2,694,547 - -0.7 2,694,616 - -0.3 2,694,689 + +0.4 2,694,689 + -1.5 2,694,697 - +0.9 2,694,697 - -1.3 2,694,697 - +2.0 2,694,697 - -0.2 2,694,805 - +1.0 2,694,953 - +1.0 2,694,970 + -2.0 2,695,056 + -1.6 2,695,336 - Shewana3_2241 0.59 +0.4 2,695,385 + Shewana3_2241 0.71 +0.6 2,695,394 + Shewana3_2241 0.73 +0.3
Or see this region's nucleotide sequence