Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2211 and Shewana3_2212 are separated by 317 nucleotides Shewana3_2212 and Shewana3_2213 are separated by 168 nucleotides
Shewana3_2211: Shewana3_2211 - NERD domain-containing protein (RefSeq), at 2,656,568 to 2,657,629
_2211
Shewana3_2212: Shewana3_2212 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 2,657,947 to 2,659,578
_2212
Shewana3_2213: Shewana3_2213 - response regulator receiver modulated CheB methylesterase (RefSeq), at 2,659,747 to 2,660,802
_2213
Position (kb)
2657
2658
2659
2660 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2657.155 kb on - strand, within Shewana3_2211 at 2657.294 kb on - strand, within Shewana3_2211 at 2657.421 kb on + strand, within Shewana3_2211 at 2657.629 kb on - strand at 2657.812 kb on - strand at 2657.874 kb on + strand at 2658.059 kb on + strand at 2658.067 kb on - strand at 2658.067 kb on - strand at 2658.214 kb on + strand, within Shewana3_2212 at 2658.274 kb on + strand, within Shewana3_2212 at 2658.388 kb on - strand, within Shewana3_2212 at 2658.404 kb on + strand, within Shewana3_2212 at 2658.485 kb on + strand, within Shewana3_2212 at 2658.770 kb on + strand, within Shewana3_2212 at 2658.889 kb on - strand, within Shewana3_2212 at 2658.917 kb on + strand, within Shewana3_2212 at 2658.923 kb on + strand, within Shewana3_2212 at 2658.969 kb on - strand, within Shewana3_2212 at 2659.113 kb on + strand, within Shewana3_2212 at 2659.136 kb on - strand, within Shewana3_2212 at 2659.470 kb on - strand at 2659.677 kb on - strand at 2659.725 kb on - strand at 2659.772 kb on - strand at 2659.867 kb on + strand, within Shewana3_2213 at 2659.875 kb on - strand, within Shewana3_2213 at 2660.027 kb on + strand, within Shewana3_2213 at 2660.034 kb on + strand, within Shewana3_2213 at 2660.281 kb on + strand, within Shewana3_2213 at 2660.360 kb on - strand, within Shewana3_2213
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,657,155 - Shewana3_2211 0.55 +2.0 2,657,294 - Shewana3_2211 0.68 +2.0 2,657,421 + Shewana3_2211 0.80 -0.3 2,657,629 - +1.0 2,657,812 - +0.5 2,657,874 + -1.1 2,658,059 + +0.5 2,658,067 - +2.0 2,658,067 - -0.3 2,658,214 + Shewana3_2212 0.16 +0.5 2,658,274 + Shewana3_2212 0.20 +2.0 2,658,388 - Shewana3_2212 0.27 +2.0 2,658,404 + Shewana3_2212 0.28 +2.0 2,658,485 + Shewana3_2212 0.33 -1.0 2,658,770 + Shewana3_2212 0.50 +3.0 2,658,889 - Shewana3_2212 0.58 +0.5 2,658,917 + Shewana3_2212 0.59 -0.9 2,658,923 + Shewana3_2212 0.60 -1.4 2,658,969 - Shewana3_2212 0.63 +1.6 2,659,113 + Shewana3_2212 0.71 -0.3 2,659,136 - Shewana3_2212 0.73 +0.5 2,659,470 - -1.9 2,659,677 - +0.0 2,659,725 - +0.4 2,659,772 - +2.0 2,659,867 + Shewana3_2213 0.11 +0.4 2,659,875 - Shewana3_2213 0.12 +1.0 2,660,027 + Shewana3_2213 0.27 -1.7 2,660,034 + Shewana3_2213 0.27 +0.4 2,660,281 + Shewana3_2213 0.51 -0.7 2,660,360 - Shewana3_2213 0.58 +0.4
Or see this region's nucleotide sequence