Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2175 and Shewana3_2176 overlap by 4 nucleotides Shewana3_2176 and Shewana3_2177 are separated by 110 nucleotides
Shewana3_2175: Shewana3_2175 - phage integrase family protein (RefSeq), at 2,607,529 to 2,608,851
_2175
Shewana3_2176: Shewana3_2176 - hypothetical protein (RefSeq), at 2,608,848 to 2,610,494
_2176
Shewana3_2177: Shewana3_2177 - hypothetical protein (RefSeq), at 2,610,605 to 2,612,809
_2177
Position (kb)
2608
2609
2610
2611 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2607.982 kb on - strand, within Shewana3_2175 at 2608.280 kb on + strand, within Shewana3_2175 at 2608.473 kb on + strand, within Shewana3_2175 at 2608.815 kb on + strand at 2608.831 kb on + strand at 2608.833 kb on + strand at 2608.841 kb on - strand at 2609.421 kb on + strand, within Shewana3_2176 at 2609.505 kb on + strand, within Shewana3_2176 at 2609.505 kb on + strand, within Shewana3_2176 at 2609.537 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.700 kb on + strand, within Shewana3_2176 at 2610.021 kb on + strand, within Shewana3_2176 at 2610.134 kb on + strand, within Shewana3_2176 at 2610.142 kb on - strand, within Shewana3_2176 at 2610.298 kb on - strand, within Shewana3_2176 at 2610.578 kb on + strand at 2610.639 kb on - strand at 2610.719 kb on + strand at 2610.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,607,982 - Shewana3_2175 0.34 +2.0 2,608,280 + Shewana3_2175 0.57 +3.0 2,608,473 + Shewana3_2175 0.71 +1.0 2,608,815 + +1.0 2,608,831 + +2.0 2,608,833 + +3.0 2,608,841 - +0.0 2,609,421 + Shewana3_2176 0.35 +1.0 2,609,505 + Shewana3_2176 0.40 -0.3 2,609,505 + Shewana3_2176 0.40 -0.5 2,609,537 - Shewana3_2176 0.42 +2.0 2,609,667 - Shewana3_2176 0.50 +1.0 2,609,667 - Shewana3_2176 0.50 +1.0 2,609,667 - Shewana3_2176 0.50 +2.0 2,609,700 + Shewana3_2176 0.52 +1.0 2,610,021 + Shewana3_2176 0.71 -1.4 2,610,134 + Shewana3_2176 0.78 +0.0 2,610,142 - Shewana3_2176 0.79 +2.0 2,610,298 - Shewana3_2176 0.88 -2.0 2,610,578 + +2.0 2,610,639 - +0.0 2,610,719 + +2.0 2,610,809 + +2.0
Or see this region's nucleotide sequence