Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2099 and Shewana3_2100 are separated by 259 nucleotides Shewana3_2100 and Shewana3_2101 are separated by 96 nucleotides Shewana3_2101 and Shewana3_2102 are separated by 233 nucleotides Shewana3_2102 and Shewana3_2103 are separated by 165 nucleotides
Shewana3_2099: Shewana3_2099 - hypothetical protein (RefSeq), at 2,522,804 to 2,524,114
_2099
Shewana3_2100: Shewana3_2100 - transposase IS3/IS911 (RefSeq), at 2,524,374 to 2,524,574
_2100
Shewana3_2101: Shewana3_2101 - putative metal dependent phosphohydrolase (RefSeq), at 2,524,671 to 2,524,961
_2101
Shewana3_2102: Shewana3_2102 - hypothetical protein (RefSeq), at 2,525,195 to 2,525,536
_2102
Shewana3_2103: Shewana3_2103 - restriction endonuclease (RefSeq), at 2,525,702 to 2,526,448
_2103
Position (kb)
2524
2525 Strain fitness (log2 ratio)
-1
0
1
2 at 2523.696 kb on - strand, within Shewana3_2099 at 2523.717 kb on + strand, within Shewana3_2099 at 2523.725 kb on - strand, within Shewana3_2099 at 2523.725 kb on - strand, within Shewana3_2099 at 2523.804 kb on + strand, within Shewana3_2099 at 2523.834 kb on - strand, within Shewana3_2099 at 2524.104 kb on + strand at 2524.131 kb on + strand at 2524.152 kb on + strand at 2524.288 kb on + strand at 2524.326 kb on + strand at 2524.404 kb on + strand, within Shewana3_2100 at 2524.451 kb on + strand, within Shewana3_2100 at 2524.812 kb on + strand, within Shewana3_2101 at 2524.818 kb on + strand, within Shewana3_2101 at 2524.839 kb on + strand, within Shewana3_2101 at 2524.986 kb on + strand at 2524.991 kb on + strand at 2524.994 kb on - strand at 2525.019 kb on + strand at 2525.058 kb on + strand at 2525.126 kb on - strand at 2525.204 kb on + strand at 2525.323 kb on - strand, within Shewana3_2102 at 2525.353 kb on + strand, within Shewana3_2102 at 2525.690 kb on + strand at 2525.730 kb on - strand at 2525.831 kb on + strand, within Shewana3_2103 at 2525.929 kb on + strand, within Shewana3_2103
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,523,696 - Shewana3_2099 0.68 +1.1 2,523,717 + Shewana3_2099 0.70 +2.1 2,523,725 - Shewana3_2099 0.70 -0.2 2,523,725 - Shewana3_2099 0.70 +2.1 2,523,804 + Shewana3_2099 0.76 +2.1 2,523,834 - Shewana3_2099 0.79 +1.1 2,524,104 + -0.2 2,524,131 + -0.9 2,524,152 + -0.2 2,524,288 + +2.1 2,524,326 + +1.1 2,524,404 + Shewana3_2100 0.15 +2.1 2,524,451 + Shewana3_2100 0.38 -0.2 2,524,812 + Shewana3_2101 0.48 +2.1 2,524,818 + Shewana3_2101 0.51 -0.3 2,524,839 + Shewana3_2101 0.58 -0.5 2,524,986 + +2.1 2,524,991 + +0.5 2,524,994 - +1.1 2,525,019 + +0.5 2,525,058 + -0.5 2,525,126 - +0.5 2,525,204 + +0.0 2,525,323 - Shewana3_2102 0.37 +1.0 2,525,353 + Shewana3_2102 0.46 +0.5 2,525,690 + +2.0 2,525,730 - +0.5 2,525,831 + Shewana3_2103 0.17 +0.5 2,525,929 + Shewana3_2103 0.30 +0.9
Or see this region's nucleotide sequence