Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2094 and Shewana3_2095 are separated by 404 nucleotides Shewana3_2095 and Shewana3_2096 overlap by 8 nucleotides Shewana3_2096 and mukB overlap by 8 nucleotides
Shewana3_2094: Shewana3_2094 - hypothetical protein (RefSeq), at 2,513,971 to 2,514,882
_2094
Shewana3_2095: Shewana3_2095 - hypothetical protein (RefSeq), at 2,515,287 to 2,516,345
_2095
Shewana3_2096: Shewana3_2096 - thioredoxin-disulfide reductase (RefSeq), at 2,516,338 to 2,517,120
_2096
Shewana3_2097: mukB - cell division protein MukB (RefSeq), at 2,517,113 to 2,521,666
mukB
Position (kb)
2515
2516
2517 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2514.336 kb on + strand, within Shewana3_2094 at 2514.336 kb on + strand, within Shewana3_2094 at 2514.359 kb on - strand, within Shewana3_2094 at 2514.486 kb on + strand, within Shewana3_2094 at 2514.486 kb on + strand, within Shewana3_2094 at 2514.608 kb on - strand, within Shewana3_2094 at 2514.646 kb on - strand, within Shewana3_2094 at 2514.652 kb on + strand, within Shewana3_2094 at 2514.698 kb on - strand, within Shewana3_2094 at 2514.765 kb on - strand, within Shewana3_2094 at 2514.907 kb on + strand at 2515.007 kb on + strand at 2515.016 kb on + strand at 2515.071 kb on + strand at 2515.071 kb on + strand at 2515.071 kb on + strand at 2515.171 kb on + strand at 2515.179 kb on - strand at 2515.269 kb on + strand at 2515.414 kb on - strand, within Shewana3_2095 at 2515.416 kb on - strand, within Shewana3_2095 at 2515.584 kb on - strand, within Shewana3_2095 at 2515.827 kb on + strand, within Shewana3_2095 at 2515.834 kb on + strand, within Shewana3_2095 at 2515.999 kb on + strand, within Shewana3_2095 at 2516.282 kb on + strand at 2516.370 kb on - strand at 2516.384 kb on + strand at 2516.384 kb on + strand at 2516.532 kb on + strand, within Shewana3_2096 at 2516.639 kb on - strand, within Shewana3_2096 at 2516.862 kb on + strand, within Shewana3_2096 at 2517.274 kb on + strand at 2517.282 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,514,336 + Shewana3_2094 0.40 -2.3 2,514,336 + Shewana3_2094 0.40 +2.1 2,514,359 - Shewana3_2094 0.43 +0.7 2,514,486 + Shewana3_2094 0.56 +0.5 2,514,486 + Shewana3_2094 0.56 +0.1 2,514,608 - Shewana3_2094 0.70 +0.3 2,514,646 - Shewana3_2094 0.74 +1.1 2,514,652 + Shewana3_2094 0.75 +1.8 2,514,698 - Shewana3_2094 0.80 -1.1 2,514,765 - Shewana3_2094 0.87 +0.9 2,514,907 + +1.1 2,515,007 + -0.1 2,515,016 + -2.0 2,515,071 + +1.6 2,515,071 + -1.5 2,515,071 + +2.1 2,515,171 + +1.5 2,515,179 - +0.5 2,515,269 + +1.1 2,515,414 - Shewana3_2095 0.12 -0.2 2,515,416 - Shewana3_2095 0.12 +0.1 2,515,584 - Shewana3_2095 0.28 +1.1 2,515,827 + Shewana3_2095 0.51 -0.7 2,515,834 + Shewana3_2095 0.52 +2.1 2,515,999 + Shewana3_2095 0.67 -0.5 2,516,282 + -1.0 2,516,370 - -0.9 2,516,384 + +0.1 2,516,384 + -0.2 2,516,532 + Shewana3_2096 0.25 -0.2 2,516,639 - Shewana3_2096 0.38 +0.5 2,516,862 + Shewana3_2096 0.67 +1.4 2,517,274 + -0.5 2,517,282 + +0.2
Or see this region's nucleotide sequence