Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2075 and Shewana3_2076 overlap by 4 nucleotides Shewana3_2076 and Shewana3_2077 overlap by 26 nucleotides
Shewana3_2075: Shewana3_2075 - L-arabinose ABC transporter, permease component 1 AraW (from data) , at 2,483,751 to 2,484,968
_2075
Shewana3_2076: Shewana3_2076 - L-arabinose ABC transporter, permease component 2 AraZ (from data) , at 2,484,965 to 2,485,927
_2076
Shewana3_2077: Shewana3_2077 - glycoside hydrolase family protein (RefSeq), at 2,485,902 to 2,487,035
_2077
Position (kb)
2484
2485
2486 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2484.035 kb on - strand, within Shewana3_2075 at 2484.037 kb on - strand, within Shewana3_2075 at 2484.085 kb on - strand, within Shewana3_2075 at 2484.202 kb on + strand, within Shewana3_2075 at 2484.410 kb on + strand, within Shewana3_2075 at 2484.588 kb on + strand, within Shewana3_2075 at 2484.659 kb on + strand, within Shewana3_2075 at 2484.764 kb on - strand, within Shewana3_2075 at 2484.769 kb on + strand, within Shewana3_2075 at 2484.809 kb on + strand, within Shewana3_2075 at 2485.035 kb on + strand at 2485.322 kb on - strand, within Shewana3_2076 at 2485.354 kb on - strand, within Shewana3_2076 at 2485.361 kb on - strand, within Shewana3_2076 at 2485.433 kb on - strand, within Shewana3_2076 at 2485.494 kb on + strand, within Shewana3_2076 at 2485.826 kb on + strand, within Shewana3_2076 at 2485.950 kb on - strand at 2485.962 kb on + strand at 2485.968 kb on + strand at 2486.066 kb on - strand, within Shewana3_2077 at 2486.066 kb on - strand, within Shewana3_2077 at 2486.227 kb on - strand, within Shewana3_2077 at 2486.458 kb on + strand, within Shewana3_2077 at 2486.465 kb on + strand, within Shewana3_2077 at 2486.466 kb on - strand, within Shewana3_2077 at 2486.466 kb on - strand, within Shewana3_2077 at 2486.506 kb on - strand, within Shewana3_2077 at 2486.717 kb on + strand, within Shewana3_2077 at 2486.725 kb on - strand, within Shewana3_2077 at 2486.725 kb on - strand, within Shewana3_2077 at 2486.801 kb on - strand, within Shewana3_2077 at 2486.867 kb on + strand, within Shewana3_2077 at 2486.877 kb on - strand, within Shewana3_2077
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,484,035 - Shewana3_2075 0.23 +1.5 2,484,037 - Shewana3_2075 0.23 -0.7 2,484,085 - Shewana3_2075 0.27 +1.1 2,484,202 + Shewana3_2075 0.37 +0.5 2,484,410 + Shewana3_2075 0.54 -1.1 2,484,588 + Shewana3_2075 0.69 +0.2 2,484,659 + Shewana3_2075 0.75 -1.5 2,484,764 - Shewana3_2075 0.83 +1.1 2,484,769 + Shewana3_2075 0.84 +0.2 2,484,809 + Shewana3_2075 0.87 +0.5 2,485,035 + +0.5 2,485,322 - Shewana3_2076 0.37 +1.1 2,485,354 - Shewana3_2076 0.40 +0.5 2,485,361 - Shewana3_2076 0.41 -1.2 2,485,433 - Shewana3_2076 0.49 -1.1 2,485,494 + Shewana3_2076 0.55 -1.0 2,485,826 + Shewana3_2076 0.89 -0.5 2,485,950 - +1.1 2,485,962 + +3.1 2,485,968 + -0.3 2,486,066 - Shewana3_2077 0.14 +1.5 2,486,066 - Shewana3_2077 0.14 +1.5 2,486,227 - Shewana3_2077 0.29 -1.1 2,486,458 + Shewana3_2077 0.49 -1.5 2,486,465 + Shewana3_2077 0.50 -0.2 2,486,466 - Shewana3_2077 0.50 -2.4 2,486,466 - Shewana3_2077 0.50 +1.3 2,486,506 - Shewana3_2077 0.53 -2.0 2,486,717 + Shewana3_2077 0.72 -0.1 2,486,725 - Shewana3_2077 0.73 +0.9 2,486,725 - Shewana3_2077 0.73 +1.1 2,486,801 - Shewana3_2077 0.79 +1.7 2,486,867 + Shewana3_2077 0.85 +0.6 2,486,877 - Shewana3_2077 0.86 +0.4
Or see this region's nucleotide sequence