Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2009 and Shewana3_2010 are separated by 66 nucleotides Shewana3_2010 and Shewana3_2011 are separated by 37 nucleotides Shewana3_2011 and Shewana3_2012 are separated by 171 nucleotides Shewana3_2012 and Shewana3_2013 overlap by 4 nucleotides
Shewana3_2009: Shewana3_2009 - hypothetical protein (RefSeq), at 2,395,973 to 2,397,385
_2009
Shewana3_2010: Shewana3_2010 - polysaccharide export protein (RefSeq), at 2,397,452 to 2,398,720
_2010
Shewana3_2011: Shewana3_2011 - anti-sigma-factor antagonist (RefSeq), at 2,398,758 to 2,399,153
_2011
Shewana3_2012: Shewana3_2012 - putative anti-sigma regulatory factor, serine/threonine protein kinase (RefSeq), at 2,399,325 to 2,399,720
_2012
Shewana3_2013: Shewana3_2013 - response regulator receiver modulated serine phosphatase (RefSeq), at 2,399,717 to 2,400,952
_2013
Position (kb)
2397
2398
2399 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2396.633 kb on + strand, within Shewana3_2009 at 2396.891 kb on + strand, within Shewana3_2009 at 2396.911 kb on - strand, within Shewana3_2009 at 2397.018 kb on - strand, within Shewana3_2009 at 2397.415 kb on + strand at 2397.515 kb on - strand at 2398.258 kb on - strand, within Shewana3_2010 at 2398.411 kb on + strand, within Shewana3_2010 at 2398.471 kb on + strand, within Shewana3_2010 at 2398.526 kb on - strand, within Shewana3_2010 at 2398.536 kb on - strand, within Shewana3_2010 at 2398.589 kb on + strand, within Shewana3_2010 at 2398.705 kb on + strand at 2398.705 kb on + strand at 2398.713 kb on - strand at 2399.266 kb on - strand at 2399.343 kb on + strand at 2399.351 kb on - strand at 2399.351 kb on - strand at 2399.361 kb on + strand at 2399.427 kb on - strand, within Shewana3_2012 at 2399.624 kb on + strand, within Shewana3_2012 at 2399.699 kb on + strand at 2399.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,396,633 + Shewana3_2009 0.47 +0.8 2,396,891 + Shewana3_2009 0.65 +0.4 2,396,911 - Shewana3_2009 0.66 +1.0 2,397,018 - Shewana3_2009 0.74 +2.0 2,397,415 + +1.4 2,397,515 - -0.3 2,398,258 - Shewana3_2010 0.64 +0.0 2,398,411 + Shewana3_2010 0.76 -1.9 2,398,471 + Shewana3_2010 0.80 -1.0 2,398,526 - Shewana3_2010 0.85 +2.0 2,398,536 - Shewana3_2010 0.85 +0.4 2,398,589 + Shewana3_2010 0.90 +0.0 2,398,705 + -0.3 2,398,705 + +1.0 2,398,713 - -0.3 2,399,266 - +2.0 2,399,343 + -1.0 2,399,351 - -0.9 2,399,351 - -0.4 2,399,361 + -1.9 2,399,427 - Shewana3_2012 0.26 +0.2 2,399,624 + Shewana3_2012 0.76 +0.1 2,399,699 + -1.4 2,399,715 + +1.0
Or see this region's nucleotide sequence