Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2010

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2009 and Shewana3_2010 are separated by 66 nucleotidesShewana3_2010 and Shewana3_2011 are separated by 37 nucleotidesShewana3_2011 and Shewana3_2012 are separated by 171 nucleotidesShewana3_2012 and Shewana3_2013 overlap by 4 nucleotides Shewana3_2009: Shewana3_2009 - hypothetical protein (RefSeq), at 2,395,973 to 2,397,385 _2009 Shewana3_2010: Shewana3_2010 - polysaccharide export protein (RefSeq), at 2,397,452 to 2,398,720 _2010 Shewana3_2011: Shewana3_2011 - anti-sigma-factor antagonist (RefSeq), at 2,398,758 to 2,399,153 _2011 Shewana3_2012: Shewana3_2012 - putative anti-sigma regulatory factor, serine/threonine protein kinase (RefSeq), at 2,399,325 to 2,399,720 _2012 Shewana3_2013: Shewana3_2013 - response regulator receiver modulated serine phosphatase (RefSeq), at 2,399,717 to 2,400,952 _2013 Position (kb) 2397 2398 2399Strain fitness (log2 ratio) -2 -1 0 1 2at 2396.633 kb on + strand, within Shewana3_2009at 2396.891 kb on + strand, within Shewana3_2009at 2396.911 kb on - strand, within Shewana3_2009at 2397.018 kb on - strand, within Shewana3_2009at 2397.415 kb on + strandat 2397.515 kb on - strandat 2398.258 kb on - strand, within Shewana3_2010at 2398.411 kb on + strand, within Shewana3_2010at 2398.471 kb on + strand, within Shewana3_2010at 2398.526 kb on - strand, within Shewana3_2010at 2398.536 kb on - strand, within Shewana3_2010at 2398.589 kb on + strand, within Shewana3_2010at 2398.705 kb on + strandat 2398.705 kb on + strandat 2398.713 kb on - strandat 2399.266 kb on - strandat 2399.343 kb on + strandat 2399.351 kb on - strandat 2399.351 kb on - strandat 2399.361 kb on + strandat 2399.427 kb on - strand, within Shewana3_2012at 2399.624 kb on + strand, within Shewana3_2012at 2399.699 kb on + strandat 2399.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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2,396,633 + Shewana3_2009 0.47 +0.8
2,396,891 + Shewana3_2009 0.65 +0.4
2,396,911 - Shewana3_2009 0.66 +1.0
2,397,018 - Shewana3_2009 0.74 +2.0
2,397,415 + +1.4
2,397,515 - -0.3
2,398,258 - Shewana3_2010 0.64 +0.0
2,398,411 + Shewana3_2010 0.76 -1.9
2,398,471 + Shewana3_2010 0.80 -1.0
2,398,526 - Shewana3_2010 0.85 +2.0
2,398,536 - Shewana3_2010 0.85 +0.4
2,398,589 + Shewana3_2010 0.90 +0.0
2,398,705 + -0.3
2,398,705 + +1.0
2,398,713 - -0.3
2,399,266 - +2.0
2,399,343 + -1.0
2,399,351 - -0.9
2,399,351 - -0.4
2,399,361 + -1.9
2,399,427 - Shewana3_2012 0.26 +0.2
2,399,624 + Shewana3_2012 0.76 +0.1
2,399,699 + -1.4
2,399,715 + +1.0

Or see this region's nucleotide sequence