Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1919 and Shewana3_1920 are separated by 10 nucleotides Shewana3_1920 and Shewana3_1921 are separated by 1 nucleotides Shewana3_1921 and Shewana3_1922 are separated by 215 nucleotides
Shewana3_1919: Shewana3_1919 - PqiA family integral membrane protein (RefSeq), at 2,280,935 to 2,282,218
_1919
Shewana3_1920: Shewana3_1920 - hypothetical protein (RefSeq), at 2,282,229 to 2,283,893
_1920
Shewana3_1921: Shewana3_1921 - hypothetical protein (RefSeq), at 2,283,895 to 2,284,494
_1921
Shewana3_1922: Shewana3_1922 - sodium/sulphate symporter (RefSeq), at 2,284,710 to 2,286,098
_1922
Position (kb)
2282
2283
2284 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2281.328 kb on - strand, within Shewana3_1919 at 2281.702 kb on - strand, within Shewana3_1919 at 2281.805 kb on - strand, within Shewana3_1919 at 2281.937 kb on + strand, within Shewana3_1919 at 2281.976 kb on - strand, within Shewana3_1919 at 2282.004 kb on - strand, within Shewana3_1919 at 2282.278 kb on + strand at 2282.724 kb on + strand, within Shewana3_1920 at 2282.724 kb on + strand, within Shewana3_1920 at 2282.732 kb on - strand, within Shewana3_1920 at 2282.764 kb on + strand, within Shewana3_1920 at 2282.782 kb on - strand, within Shewana3_1920 at 2282.806 kb on + strand, within Shewana3_1920 at 2282.938 kb on + strand, within Shewana3_1920 at 2282.987 kb on + strand, within Shewana3_1920 at 2283.186 kb on - strand, within Shewana3_1920 at 2283.191 kb on + strand, within Shewana3_1920 at 2283.353 kb on - strand, within Shewana3_1920 at 2283.565 kb on + strand, within Shewana3_1920 at 2283.702 kb on + strand, within Shewana3_1920 at 2283.777 kb on - strand at 2283.963 kb on - strand, within Shewana3_1921 at 2284.463 kb on + strand at 2284.463 kb on + strand at 2284.486 kb on + strand at 2284.588 kb on + strand at 2284.599 kb on + strand at 2284.707 kb on + strand at 2284.735 kb on + strand at 2284.776 kb on - strand at 2284.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,281,328 - Shewana3_1919 0.31 +0.4 2,281,702 - Shewana3_1919 0.60 +0.0 2,281,805 - Shewana3_1919 0.68 +0.0 2,281,937 + Shewana3_1919 0.78 +0.4 2,281,976 - Shewana3_1919 0.81 +0.0 2,282,004 - Shewana3_1919 0.83 +2.0 2,282,278 + -0.3 2,282,724 + Shewana3_1920 0.30 +0.0 2,282,724 + Shewana3_1920 0.30 +0.0 2,282,732 - Shewana3_1920 0.30 +1.0 2,282,764 + Shewana3_1920 0.32 +0.4 2,282,782 - Shewana3_1920 0.33 -0.7 2,282,806 + Shewana3_1920 0.35 +0.0 2,282,938 + Shewana3_1920 0.43 -0.6 2,282,987 + Shewana3_1920 0.46 -0.6 2,283,186 - Shewana3_1920 0.57 +0.0 2,283,191 + Shewana3_1920 0.58 -1.6 2,283,353 - Shewana3_1920 0.68 +0.0 2,283,565 + Shewana3_1920 0.80 +0.3 2,283,702 + Shewana3_1920 0.88 -0.2 2,283,777 - +0.7 2,283,963 - Shewana3_1921 0.11 +0.3 2,284,463 + +0.2 2,284,463 + -0.8 2,284,486 + +0.7 2,284,588 + -0.0 2,284,599 + -0.1 2,284,707 + +2.0 2,284,735 + +1.7 2,284,776 - -2.9 2,284,792 - +0.2
Or see this region's nucleotide sequence