Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1907

Experiment: 2-Furfuraldehyde 0.0625 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1905 and Shewana3_1906 are separated by 28 nucleotidesShewana3_1906 and Shewana3_1907 are separated by 82 nucleotidesShewana3_1907 and Shewana3_1908 are separated by 19 nucleotides Shewana3_1905: Shewana3_1905 - hypothetical protein (RefSeq), at 2,262,462 to 2,262,698 _1905 Shewana3_1906: Shewana3_1906 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,262,727 to 2,263,464 _1906 Shewana3_1907: Shewana3_1907 - iron-containing alcohol dehydrogenase (RefSeq), at 2,263,547 to 2,264,617 _1907 Shewana3_1908: Shewana3_1908 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,264,637 to 2,265,824 _1908 Position (kb) 2263 2264 2265Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2262.646 kb on - strand, within Shewana3_1905at 2262.745 kb on - strandat 2264.044 kb on - strand, within Shewana3_1907at 2264.054 kb on - strand, within Shewana3_1907at 2264.105 kb on + strand, within Shewana3_1907at 2264.161 kb on - strand, within Shewana3_1907at 2264.166 kb on - strand, within Shewana3_1907at 2264.408 kb on - strand, within Shewana3_1907at 2264.408 kb on - strand, within Shewana3_1907at 2264.408 kb on - strand, within Shewana3_1907at 2264.432 kb on - strand, within Shewana3_1907at 2264.531 kb on - strandat 2264.531 kb on - strandat 2264.531 kb on - strandat 2264.531 kb on - strandat 2264.531 kb on - strandat 2264.820 kb on - strand, within Shewana3_1908at 2264.923 kb on - strand, within Shewana3_1908at 2265.095 kb on - strand, within Shewana3_1908at 2265.299 kb on - strand, within Shewana3_1908at 2265.587 kb on - strand, within Shewana3_1908

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
remove
2,262,646 - Shewana3_1905 0.78 +0.1
2,262,745 - +1.0
2,264,044 - Shewana3_1907 0.46 +0.9
2,264,054 - Shewana3_1907 0.47 +0.3
2,264,105 + Shewana3_1907 0.52 +2.0
2,264,161 - Shewana3_1907 0.57 +1.1
2,264,166 - Shewana3_1907 0.58 -1.8
2,264,408 - Shewana3_1907 0.80 +1.0
2,264,408 - Shewana3_1907 0.80 +0.5
2,264,408 - Shewana3_1907 0.80 +3.6
2,264,432 - Shewana3_1907 0.83 +0.4
2,264,531 - -1.3
2,264,531 - +0.0
2,264,531 - +1.0
2,264,531 - -0.3
2,264,531 - +0.2
2,264,820 - Shewana3_1908 0.15 +1.1
2,264,923 - Shewana3_1908 0.24 -1.1
2,265,095 - Shewana3_1908 0.39 +1.0
2,265,299 - Shewana3_1908 0.56 +0.5
2,265,587 - Shewana3_1908 0.80 +0.5

Or see this region's nucleotide sequence