Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1874 and Shewana3_1875 are separated by 3 nucleotides Shewana3_1875 and Shewana3_1876 are separated by 71 nucleotides
Shewana3_1874: Shewana3_1874 - LysR family transcriptional regulator (RefSeq), at 2,219,231 to 2,220,109
_1874
Shewana3_1875: Shewana3_1875 - (NiFe) hydrogenase maturation protein HypF (RefSeq), at 2,220,113 to 2,222,620
_1875
Shewana3_1876: Shewana3_1876 - hypothetical protein (RefSeq), at 2,222,692 to 2,224,542
_1876
Position (kb)
2220
2221
2222
2223 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2219.120 kb on - strand at 2219.335 kb on + strand, within Shewana3_1874 at 2219.666 kb on - strand, within Shewana3_1874 at 2219.708 kb on - strand, within Shewana3_1874 at 2219.768 kb on + strand, within Shewana3_1874 at 2219.774 kb on - strand, within Shewana3_1874 at 2219.816 kb on - strand, within Shewana3_1874 at 2219.880 kb on + strand, within Shewana3_1874 at 2219.939 kb on + strand, within Shewana3_1874 at 2219.939 kb on + strand, within Shewana3_1874 at 2220.008 kb on - strand, within Shewana3_1874 at 2220.066 kb on - strand at 2220.223 kb on - strand at 2220.273 kb on + strand at 2220.295 kb on + strand at 2220.295 kb on + strand at 2220.356 kb on + strand at 2220.364 kb on - strand, within Shewana3_1875 at 2220.440 kb on + strand, within Shewana3_1875 at 2220.468 kb on - strand, within Shewana3_1875 at 2220.595 kb on + strand, within Shewana3_1875 at 2220.596 kb on + strand, within Shewana3_1875 at 2220.697 kb on + strand, within Shewana3_1875 at 2220.697 kb on + strand, within Shewana3_1875 at 2220.698 kb on + strand, within Shewana3_1875 at 2220.705 kb on - strand, within Shewana3_1875 at 2220.706 kb on - strand, within Shewana3_1875 at 2221.029 kb on - strand, within Shewana3_1875 at 2221.068 kb on - strand, within Shewana3_1875 at 2221.136 kb on + strand, within Shewana3_1875 at 2221.144 kb on - strand, within Shewana3_1875 at 2221.348 kb on + strand, within Shewana3_1875 at 2221.982 kb on - strand, within Shewana3_1875 at 2222.004 kb on - strand, within Shewana3_1875 at 2222.113 kb on + strand, within Shewana3_1875 at 2222.446 kb on - strand at 2222.499 kb on - strand at 2222.807 kb on - strand at 2222.985 kb on - strand, within Shewana3_1876 at 2223.096 kb on + strand, within Shewana3_1876 at 2223.204 kb on + strand, within Shewana3_1876 at 2223.288 kb on - strand, within Shewana3_1876 at 2223.320 kb on + strand, within Shewana3_1876 at 2223.538 kb on + strand, within Shewana3_1876 at 2223.546 kb on - strand, within Shewana3_1876
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,219,120 - -1.0 2,219,335 + Shewana3_1874 0.12 -0.1 2,219,666 - Shewana3_1874 0.49 +0.0 2,219,708 - Shewana3_1874 0.54 +1.0 2,219,768 + Shewana3_1874 0.61 +0.6 2,219,774 - Shewana3_1874 0.62 -0.3 2,219,816 - Shewana3_1874 0.67 +1.0 2,219,880 + Shewana3_1874 0.74 +2.0 2,219,939 + Shewana3_1874 0.81 +0.9 2,219,939 + Shewana3_1874 0.81 +0.6 2,220,008 - Shewana3_1874 0.88 -0.3 2,220,066 - +2.0 2,220,223 - +0.2 2,220,273 + -1.6 2,220,295 + -0.3 2,220,295 + +0.4 2,220,356 + +0.7 2,220,364 - Shewana3_1875 0.10 +0.4 2,220,440 + Shewana3_1875 0.13 +1.0 2,220,468 - Shewana3_1875 0.14 -0.6 2,220,595 + Shewana3_1875 0.19 +0.4 2,220,596 + Shewana3_1875 0.19 -0.8 2,220,697 + Shewana3_1875 0.23 -0.9 2,220,697 + Shewana3_1875 0.23 +1.0 2,220,698 + Shewana3_1875 0.23 +1.8 2,220,705 - Shewana3_1875 0.24 -0.8 2,220,706 - Shewana3_1875 0.24 +0.4 2,221,029 - Shewana3_1875 0.37 +1.0 2,221,068 - Shewana3_1875 0.38 +0.4 2,221,136 + Shewana3_1875 0.41 -0.9 2,221,144 - Shewana3_1875 0.41 +0.4 2,221,348 + Shewana3_1875 0.49 -2.0 2,221,982 - Shewana3_1875 0.75 +1.0 2,222,004 - Shewana3_1875 0.75 -2.3 2,222,113 + Shewana3_1875 0.80 +2.0 2,222,446 - -1.2 2,222,499 - +0.0 2,222,807 - -0.2 2,222,985 - Shewana3_1876 0.16 -0.2 2,223,096 + Shewana3_1876 0.22 -1.4 2,223,204 + Shewana3_1876 0.28 -0.4 2,223,288 - Shewana3_1876 0.32 +1.0 2,223,320 + Shewana3_1876 0.34 -0.3 2,223,538 + Shewana3_1876 0.46 +1.2 2,223,546 - Shewana3_1876 0.46 +0.2
Or see this region's nucleotide sequence