Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1859 and Shewana3_1860 are separated by 56 nucleotides Shewana3_1860 and Shewana3_1861 are separated by 61 nucleotides
Shewana3_1859: Shewana3_1859 - helicase c2 (RefSeq), at 2,200,160 to 2,202,184
_1859
Shewana3_1860: Shewana3_1860 - rod shape-determining-related protein (RefSeq), at 2,202,241 to 2,202,759
_1860
Shewana3_1861: Shewana3_1861 - TonB-dependent receptor (RefSeq), at 2,202,821 to 2,204,782
_1861
Position (kb)
2202
2203 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2201.252 kb on + strand, within Shewana3_1859 at 2201.487 kb on + strand, within Shewana3_1859 at 2201.622 kb on + strand, within Shewana3_1859 at 2201.679 kb on + strand, within Shewana3_1859 at 2201.850 kb on + strand, within Shewana3_1859 at 2201.878 kb on - strand, within Shewana3_1859 at 2202.012 kb on + strand at 2202.101 kb on - strand at 2202.106 kb on - strand at 2202.429 kb on + strand, within Shewana3_1860 at 2202.455 kb on - strand, within Shewana3_1860 at 2202.485 kb on + strand, within Shewana3_1860 at 2202.575 kb on + strand, within Shewana3_1860 at 2202.689 kb on - strand, within Shewana3_1860 at 2202.805 kb on + strand at 2202.813 kb on - strand at 2202.941 kb on - strand at 2203.039 kb on + strand, within Shewana3_1861 at 2203.096 kb on + strand, within Shewana3_1861 at 2203.156 kb on + strand, within Shewana3_1861 at 2203.176 kb on - strand, within Shewana3_1861 at 2203.377 kb on + strand, within Shewana3_1861 at 2203.405 kb on + strand, within Shewana3_1861 at 2203.507 kb on + strand, within Shewana3_1861 at 2203.507 kb on + strand, within Shewana3_1861 at 2203.549 kb on + strand, within Shewana3_1861 at 2203.695 kb on - strand, within Shewana3_1861
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,201,252 + Shewana3_1859 0.54 -2.0 2,201,487 + Shewana3_1859 0.66 +0.6 2,201,622 + Shewana3_1859 0.72 -0.0 2,201,679 + Shewana3_1859 0.75 +1.0 2,201,850 + Shewana3_1859 0.83 -0.1 2,201,878 - Shewana3_1859 0.85 +2.0 2,202,012 + +0.3 2,202,101 - +0.4 2,202,106 - +2.0 2,202,429 + Shewana3_1860 0.36 -0.6 2,202,455 - Shewana3_1860 0.41 +2.0 2,202,485 + Shewana3_1860 0.47 -1.0 2,202,575 + Shewana3_1860 0.64 -1.9 2,202,689 - Shewana3_1860 0.86 +1.0 2,202,805 + +1.0 2,202,813 - -0.9 2,202,941 - +0.1 2,203,039 + Shewana3_1861 0.11 -1.4 2,203,096 + Shewana3_1861 0.14 -0.3 2,203,156 + Shewana3_1861 0.17 -0.4 2,203,176 - Shewana3_1861 0.18 -0.1 2,203,377 + Shewana3_1861 0.28 +2.0 2,203,405 + Shewana3_1861 0.30 +0.4 2,203,507 + Shewana3_1861 0.35 -1.2 2,203,507 + Shewana3_1861 0.35 +0.4 2,203,549 + Shewana3_1861 0.37 -1.4 2,203,695 - Shewana3_1861 0.45 +0.3
Or see this region's nucleotide sequence