Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1860

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1859 and Shewana3_1860 are separated by 56 nucleotidesShewana3_1860 and Shewana3_1861 are separated by 61 nucleotides Shewana3_1859: Shewana3_1859 - helicase c2 (RefSeq), at 2,200,160 to 2,202,184 _1859 Shewana3_1860: Shewana3_1860 - rod shape-determining-related protein (RefSeq), at 2,202,241 to 2,202,759 _1860 Shewana3_1861: Shewana3_1861 - TonB-dependent receptor (RefSeq), at 2,202,821 to 2,204,782 _1861 Position (kb) 2202 2203Strain fitness (log2 ratio) -2 -1 0 1 2at 2201.252 kb on + strand, within Shewana3_1859at 2201.487 kb on + strand, within Shewana3_1859at 2201.622 kb on + strand, within Shewana3_1859at 2201.679 kb on + strand, within Shewana3_1859at 2201.850 kb on + strand, within Shewana3_1859at 2201.878 kb on - strand, within Shewana3_1859at 2202.012 kb on + strandat 2202.101 kb on - strandat 2202.106 kb on - strandat 2202.429 kb on + strand, within Shewana3_1860at 2202.455 kb on - strand, within Shewana3_1860at 2202.485 kb on + strand, within Shewana3_1860at 2202.575 kb on + strand, within Shewana3_1860at 2202.689 kb on - strand, within Shewana3_1860at 2202.805 kb on + strandat 2202.813 kb on - strandat 2202.941 kb on - strandat 2203.039 kb on + strand, within Shewana3_1861at 2203.096 kb on + strand, within Shewana3_1861at 2203.156 kb on + strand, within Shewana3_1861at 2203.176 kb on - strand, within Shewana3_1861at 2203.377 kb on + strand, within Shewana3_1861at 2203.405 kb on + strand, within Shewana3_1861at 2203.507 kb on + strand, within Shewana3_1861at 2203.507 kb on + strand, within Shewana3_1861at 2203.549 kb on + strand, within Shewana3_1861at 2203.695 kb on - strand, within Shewana3_1861

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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2,201,252 + Shewana3_1859 0.54 -2.0
2,201,487 + Shewana3_1859 0.66 +0.6
2,201,622 + Shewana3_1859 0.72 -0.0
2,201,679 + Shewana3_1859 0.75 +1.0
2,201,850 + Shewana3_1859 0.83 -0.1
2,201,878 - Shewana3_1859 0.85 +2.0
2,202,012 + +0.3
2,202,101 - +0.4
2,202,106 - +2.0
2,202,429 + Shewana3_1860 0.36 -0.6
2,202,455 - Shewana3_1860 0.41 +2.0
2,202,485 + Shewana3_1860 0.47 -1.0
2,202,575 + Shewana3_1860 0.64 -1.9
2,202,689 - Shewana3_1860 0.86 +1.0
2,202,805 + +1.0
2,202,813 - -0.9
2,202,941 - +0.1
2,203,039 + Shewana3_1861 0.11 -1.4
2,203,096 + Shewana3_1861 0.14 -0.3
2,203,156 + Shewana3_1861 0.17 -0.4
2,203,176 - Shewana3_1861 0.18 -0.1
2,203,377 + Shewana3_1861 0.28 +2.0
2,203,405 + Shewana3_1861 0.30 +0.4
2,203,507 + Shewana3_1861 0.35 -1.2
2,203,507 + Shewana3_1861 0.35 +0.4
2,203,549 + Shewana3_1861 0.37 -1.4
2,203,695 - Shewana3_1861 0.45 +0.3

Or see this region's nucleotide sequence