Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1750 and Shewana3_1751 are separated by 149 nucleotides Shewana3_1751 and clpS are separated by 193 nucleotides clpS and Shewana3_1753 are separated by 42 nucleotides Shewana3_1753 and infA are separated by 103 nucleotides infA and Shewana3_1755 are separated by 82 nucleotides
Shewana3_1750: Shewana3_1750 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 2,063,884 to 2,066,109
_1750
Shewana3_1751: Shewana3_1751 - cold-shock DNA-binding protein family protein (RefSeq), at 2,066,259 to 2,066,465
_1751
Shewana3_1752: clpS - ATP-dependent Clp protease adaptor protein ClpS (RefSeq), at 2,066,659 to 2,066,967
clpS
Shewana3_1753: Shewana3_1753 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 2,067,010 to 2,069,277
_1753
Shewana3_1754: infA - translation initiation factor IF-1 (RefSeq), at 2,069,381 to 2,069,599
infA
Shewana3_1755: Shewana3_1755 - arginyl-tRNA-protein transferase (RefSeq), at 2,069,682 to 2,070,398
_1755
Position (kb)
2067
2068
2069
2070 Strain fitness (log2 ratio)
-1
0
1
2 at 2066.102 kb on - strand at 2066.179 kb on - strand at 2066.368 kb on + strand, within Shewana3_1751 at 2066.376 kb on - strand, within Shewana3_1751 at 2066.522 kb on - strand at 2066.548 kb on - strand at 2066.946 kb on + strand at 2066.981 kb on + strand at 2067.468 kb on - strand, within Shewana3_1753 at 2067.615 kb on - strand, within Shewana3_1753 at 2068.164 kb on - strand, within Shewana3_1753 at 2068.353 kb on - strand, within Shewana3_1753 at 2068.432 kb on - strand, within Shewana3_1753 at 2068.471 kb on + strand, within Shewana3_1753 at 2068.474 kb on + strand, within Shewana3_1753 at 2068.499 kb on + strand, within Shewana3_1753 at 2068.621 kb on + strand, within Shewana3_1753 at 2068.865 kb on + strand, within Shewana3_1753 at 2069.714 kb on - strand at 2069.744 kb on - strand at 2069.846 kb on + strand, within Shewana3_1755 at 2069.918 kb on - strand, within Shewana3_1755 at 2070.092 kb on + strand, within Shewana3_1755 at 2070.092 kb on + strand, within Shewana3_1755
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,066,102 - -1.1 2,066,179 - +0.9 2,066,368 + Shewana3_1751 0.53 -0.8 2,066,376 - Shewana3_1751 0.57 -0.2 2,066,522 - +1.4 2,066,548 - +0.8 2,066,946 + -0.3 2,066,981 + +0.0 2,067,468 - Shewana3_1753 0.20 +2.0 2,067,615 - Shewana3_1753 0.27 +0.0 2,068,164 - Shewana3_1753 0.51 +0.0 2,068,353 - Shewana3_1753 0.59 +1.0 2,068,432 - Shewana3_1753 0.63 +2.0 2,068,471 + Shewana3_1753 0.64 -1.0 2,068,474 + Shewana3_1753 0.65 -0.3 2,068,499 + Shewana3_1753 0.66 -0.2 2,068,621 + Shewana3_1753 0.71 -1.0 2,068,865 + Shewana3_1753 0.82 -0.9 2,069,714 - +1.0 2,069,744 - +0.0 2,069,846 + Shewana3_1755 0.23 +0.3 2,069,918 - Shewana3_1755 0.33 -0.7 2,070,092 + Shewana3_1755 0.57 -0.7 2,070,092 + Shewana3_1755 0.57 -0.6
Or see this region's nucleotide sequence