Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1721 and Shewana3_1722 are separated by 116 nucleotides Shewana3_1722 and Shewana3_1723 are separated by 15 nucleotides Shewana3_1723 and Shewana3_1724 overlap by 10 nucleotides Shewana3_1724 and Shewana3_1725 are separated by 164 nucleotides
Shewana3_1721: Shewana3_1721 - metal dependent phosphohydrolase (RefSeq), at 2,023,995 to 2,025,257
_1721
Shewana3_1722: Shewana3_1722 - prolyl 4-hydroxylase, alpha subunit (RefSeq), at 2,025,374 to 2,026,069
_1722
Shewana3_1723: Shewana3_1723 - ATPase domain-containing protein (RefSeq), at 2,026,085 to 2,027,434
_1723
Shewana3_1724: Shewana3_1724 - two component transcriptional regulator (RefSeq), at 2,027,425 to 2,028,108
_1724
Shewana3_1725: Shewana3_1725 - hypothetical protein (RefSeq), at 2,028,273 to 2,028,620
_1725
Position (kb)
2026
2027
2028 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2025.560 kb on + strand, within Shewana3_1722 at 2025.614 kb on + strand, within Shewana3_1722 at 2025.873 kb on + strand, within Shewana3_1722 at 2026.333 kb on - strand, within Shewana3_1723 at 2026.338 kb on - strand, within Shewana3_1723 at 2026.538 kb on + strand, within Shewana3_1723 at 2026.875 kb on + strand, within Shewana3_1723 at 2027.063 kb on + strand, within Shewana3_1723 at 2027.472 kb on + strand at 2027.480 kb on - strand at 2027.480 kb on - strand at 2027.531 kb on - strand, within Shewana3_1724 at 2027.724 kb on - strand, within Shewana3_1724 at 2028.118 kb on - strand at 2028.212 kb on - strand at 2028.421 kb on - strand, within Shewana3_1725
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 2,025,560 + Shewana3_1722 0.27 +0.0 2,025,614 + Shewana3_1722 0.34 -1.0 2,025,873 + Shewana3_1722 0.72 +0.0 2,026,333 - Shewana3_1723 0.18 +0.7 2,026,338 - Shewana3_1723 0.19 -0.7 2,026,538 + Shewana3_1723 0.34 +0.4 2,026,875 + Shewana3_1723 0.59 -0.3 2,027,063 + Shewana3_1723 0.72 -1.8 2,027,472 + +1.0 2,027,480 - +2.0 2,027,480 - -1.4 2,027,531 - Shewana3_1724 0.15 +0.4 2,027,724 - Shewana3_1724 0.44 +0.4 2,028,118 - -1.4 2,028,212 - -0.1 2,028,421 - Shewana3_1725 0.43 +0.1
Or see this region's nucleotide sequence