Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1681 and Shewana3_1682 are separated by 253 nucleotides Shewana3_1682 and Shewana3_1683 are separated by 69 nucleotides Shewana3_1683 and Shewana3_1684 are separated by 199 nucleotides Shewana3_1684 and Shewana3_1685 are separated by 71 nucleotides
Shewana3_1681: Shewana3_1681 - hypothetical protein (RefSeq), at 1,977,071 to 1,977,598
_1681
Shewana3_1682: Shewana3_1682 - hypothetical protein (RefSeq), at 1,977,852 to 1,978,187
_1682
Shewana3_1683: Shewana3_1683 - LysR family transcriptional regulator (RefSeq), at 1,978,257 to 1,979,156
_1683
Shewana3_1684: Shewana3_1684 - hypothetical protein (RefSeq), at 1,979,356 to 1,979,835
_1684
Shewana3_1685: Shewana3_1685 - extradiol ring-cleavage dioxygenase III subunit B (RefSeq), at 1,979,907 to 1,980,716
_1685
Position (kb)
1978
1979
1980 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1977.330 kb on - strand, within Shewana3_1681 at 1977.330 kb on - strand, within Shewana3_1681 at 1977.341 kb on + strand, within Shewana3_1681 at 1977.341 kb on + strand, within Shewana3_1681 at 1977.349 kb on - strand, within Shewana3_1681 at 1977.372 kb on - strand, within Shewana3_1681 at 1977.404 kb on - strand, within Shewana3_1681 at 1977.435 kb on - strand, within Shewana3_1681 at 1977.565 kb on - strand at 1977.834 kb on + strand at 1977.961 kb on + strand, within Shewana3_1682 at 1978.153 kb on + strand, within Shewana3_1682 at 1978.180 kb on + strand at 1978.237 kb on + strand at 1978.369 kb on - strand, within Shewana3_1683 at 1978.605 kb on + strand, within Shewana3_1683 at 1978.641 kb on + strand, within Shewana3_1683 at 1979.045 kb on + strand, within Shewana3_1683 at 1979.053 kb on - strand, within Shewana3_1683 at 1979.152 kb on - strand at 1979.261 kb on - strand at 1979.264 kb on - strand at 1979.328 kb on - strand at 1979.335 kb on - strand at 1979.385 kb on + strand at 1979.428 kb on + strand, within Shewana3_1684 at 1979.436 kb on - strand, within Shewana3_1684 at 1980.050 kb on - strand, within Shewana3_1685
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,977,330 - Shewana3_1681 0.49 -1.5 1,977,330 - Shewana3_1681 0.49 +0.4 1,977,341 + Shewana3_1681 0.51 -1.7 1,977,341 + Shewana3_1681 0.51 +3.0 1,977,349 - Shewana3_1681 0.53 +0.4 1,977,372 - Shewana3_1681 0.57 -0.3 1,977,404 - Shewana3_1681 0.63 +2.0 1,977,435 - Shewana3_1681 0.69 +0.4 1,977,565 - +2.0 1,977,834 + +2.0 1,977,961 + Shewana3_1682 0.32 +3.6 1,978,153 + Shewana3_1682 0.90 +3.0 1,978,180 + -0.6 1,978,237 + -0.6 1,978,369 - Shewana3_1683 0.12 +1.0 1,978,605 + Shewana3_1683 0.39 -1.5 1,978,641 + Shewana3_1683 0.43 -1.7 1,979,045 + Shewana3_1683 0.88 -1.0 1,979,053 - Shewana3_1683 0.88 +1.6 1,979,152 - -2.1 1,979,261 - -0.0 1,979,264 - -0.0 1,979,328 - -0.8 1,979,335 - +0.2 1,979,385 + -0.5 1,979,428 + Shewana3_1684 0.15 +0.2 1,979,436 - Shewana3_1684 0.17 -0.5 1,980,050 - Shewana3_1685 0.18 +2.0
Or see this region's nucleotide sequence