Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1678 and Shewana3_1679 are separated by 10 nucleotides Shewana3_1679 and Shewana3_1680 are separated by 254 nucleotides Shewana3_1680 and Shewana3_1681 are separated by 109 nucleotides Shewana3_1681 and Shewana3_1682 are separated by 253 nucleotides
Shewana3_1678: Shewana3_1678 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,973,404 to 1,975,521
_1678
Shewana3_1679: Shewana3_1679 - hypothetical protein (RefSeq), at 1,975,532 to 1,975,996
_1679
Shewana3_1680: Shewana3_1680 - hypothetical protein (RefSeq), at 1,976,251 to 1,976,961
_1680
Shewana3_1681: Shewana3_1681 - hypothetical protein (RefSeq), at 1,977,071 to 1,977,598
_1681
Shewana3_1682: Shewana3_1682 - hypothetical protein (RefSeq), at 1,977,852 to 1,978,187
_1682
Position (kb)
1976
1977 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1975.251 kb on + strand, within Shewana3_1678 at 1975.325 kb on + strand at 1975.626 kb on - strand, within Shewana3_1679 at 1975.630 kb on + strand, within Shewana3_1679 at 1975.638 kb on - strand, within Shewana3_1679 at 1975.638 kb on - strand, within Shewana3_1679 at 1975.653 kb on - strand, within Shewana3_1679 at 1975.660 kb on + strand, within Shewana3_1679 at 1975.704 kb on + strand, within Shewana3_1679 at 1975.764 kb on - strand, within Shewana3_1679 at 1975.765 kb on - strand, within Shewana3_1679 at 1975.897 kb on + strand, within Shewana3_1679 at 1975.958 kb on + strand at 1976.003 kb on + strand at 1976.222 kb on - strand at 1976.254 kb on - strand at 1976.256 kb on - strand at 1976.282 kb on + strand at 1976.417 kb on - strand, within Shewana3_1680 at 1976.424 kb on - strand, within Shewana3_1680 at 1976.469 kb on - strand, within Shewana3_1680 at 1976.528 kb on - strand, within Shewana3_1680 at 1976.546 kb on + strand, within Shewana3_1680 at 1976.677 kb on + strand, within Shewana3_1680 at 1976.736 kb on - strand, within Shewana3_1680 at 1977.135 kb on + strand, within Shewana3_1681 at 1977.192 kb on + strand, within Shewana3_1681 at 1977.330 kb on - strand, within Shewana3_1681 at 1977.330 kb on - strand, within Shewana3_1681 at 1977.341 kb on + strand, within Shewana3_1681 at 1977.341 kb on + strand, within Shewana3_1681 at 1977.349 kb on - strand, within Shewana3_1681 at 1977.372 kb on - strand, within Shewana3_1681 at 1977.404 kb on - strand, within Shewana3_1681 at 1977.435 kb on - strand, within Shewana3_1681 at 1977.565 kb on - strand at 1977.834 kb on + strand at 1977.961 kb on + strand, within Shewana3_1682
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,975,251 + Shewana3_1678 0.87 -0.1 1,975,325 + +0.4 1,975,626 - Shewana3_1679 0.20 +1.0 1,975,630 + Shewana3_1679 0.21 +0.1 1,975,638 - Shewana3_1679 0.23 +0.8 1,975,638 - Shewana3_1679 0.23 +2.0 1,975,653 - Shewana3_1679 0.26 -0.3 1,975,660 + Shewana3_1679 0.28 -0.9 1,975,704 + Shewana3_1679 0.37 +1.0 1,975,764 - Shewana3_1679 0.50 -0.5 1,975,765 - Shewana3_1679 0.50 +2.0 1,975,897 + Shewana3_1679 0.78 +0.1 1,975,958 + +0.3 1,976,003 + +0.1 1,976,222 - -1.1 1,976,254 - +0.2 1,976,256 - +0.4 1,976,282 + -1.3 1,976,417 - Shewana3_1680 0.23 +1.0 1,976,424 - Shewana3_1680 0.24 -2.0 1,976,469 - Shewana3_1680 0.31 -0.7 1,976,528 - Shewana3_1680 0.39 +0.4 1,976,546 + Shewana3_1680 0.41 +2.0 1,976,677 + Shewana3_1680 0.60 -0.9 1,976,736 - Shewana3_1680 0.68 +0.4 1,977,135 + Shewana3_1681 0.12 +0.4 1,977,192 + Shewana3_1681 0.23 +0.6 1,977,330 - Shewana3_1681 0.49 -1.5 1,977,330 - Shewana3_1681 0.49 +0.4 1,977,341 + Shewana3_1681 0.51 -1.7 1,977,341 + Shewana3_1681 0.51 +3.0 1,977,349 - Shewana3_1681 0.53 +0.4 1,977,372 - Shewana3_1681 0.57 -0.3 1,977,404 - Shewana3_1681 0.63 +2.0 1,977,435 - Shewana3_1681 0.69 +0.4 1,977,565 - +2.0 1,977,834 + +2.0 1,977,961 + Shewana3_1682 0.32 +3.6
Or see this region's nucleotide sequence