Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1663 and Shewana3_1664 are separated by 35 nucleotides Shewana3_1664 and Shewana3_1665 are separated by 107 nucleotides Shewana3_1665 and Shewana3_1666 are separated by 405 nucleotides
Shewana3_1663: Shewana3_1663 - hypothetical protein (RefSeq), at 1,955,055 to 1,955,366
_1663
Shewana3_1664: Shewana3_1664 - ThiJ/PfpI domain-containing protein (RefSeq), at 1,955,402 to 1,956,004
_1664
Shewana3_1665: Shewana3_1665 - hypothetical protein (RefSeq), at 1,956,112 to 1,957,143
_1665
Shewana3_1666: Shewana3_1666 - butyryl-CoA:acetate CoA transferase (RefSeq), at 1,957,549 to 1,958,205
_1666
Position (kb) 1956
1957
1958 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1955.207 kb on - strand, within Shewana3_1663 at 1955.869 kb on + strand, within Shewana3_1664 at 1956.027 kb on + strand at 1956.319 kb on - strand, within Shewana3_1665 at 1956.342 kb on - strand, within Shewana3_1665 at 1956.342 kb on - strand, within Shewana3_1665 at 1957.092 kb on + strand at 1957.092 kb on + strand at 1957.247 kb on + strand at 1957.252 kb on + strand at 1957.252 kb on + strand at 1957.354 kb on + strand at 1957.364 kb on - strand at 1957.380 kb on + strand at 1957.387 kb on + strand at 1957.716 kb on - strand, within Shewana3_1666
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,955,207 - Shewana3_1663 0.49 +1.0 1,955,869 + Shewana3_1664 0.77 -0.8 1,956,027 + +2.0 1,956,319 - Shewana3_1665 0.20 +4.0 1,956,342 - Shewana3_1665 0.22 -1.2 1,956,342 - Shewana3_1665 0.22 -0.9 1,957,092 + +0.7 1,957,092 + +0.6 1,957,247 + +0.1 1,957,252 + +0.4 1,957,252 + +1.0 1,957,354 + +0.1 1,957,364 - +0.4 1,957,380 + +0.2 1,957,387 + -0.4 1,957,716 - Shewana3_1666 0.25 +1.3
Or see this region's nucleotide sequence