Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1614

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1613 and Shewana3_1614 are separated by 530 nucleotidesShewana3_1614 and Shewana3_1615 are separated by 254 nucleotides Shewana3_1613: Shewana3_1613 - rRNA (guanine-N(1)-)-methyltransferase (RefSeq), at 1,896,738 to 1,898,720 _1613 Shewana3_1614: Shewana3_1614 - no description, at 1,899,251 to 1,899,625 _1614 Shewana3_1615: Shewana3_1615 - histone family protein DNA-binding protein (RefSeq), at 1,899,880 to 1,900,155 _1615 Position (kb) 1899 1900Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1898.438 kb on + strand, within Shewana3_1613at 1898.446 kb on - strand, within Shewana3_1613at 1898.455 kb on + strand, within Shewana3_1613at 1898.537 kb on + strandat 1898.537 kb on + strandat 1898.574 kb on + strandat 1898.635 kb on + strandat 1898.635 kb on + strandat 1898.635 kb on + strandat 1898.635 kb on + strandat 1898.635 kb on + strandat 1898.643 kb on - strandat 1898.643 kb on - strandat 1898.643 kb on - strandat 1898.670 kb on - strandat 1898.798 kb on + strandat 1898.808 kb on + strandat 1898.832 kb on + strandat 1898.832 kb on + strandat 1898.850 kb on - strandat 1898.863 kb on + strandat 1898.875 kb on + strandat 1898.901 kb on + strandat 1898.943 kb on + strandat 1898.950 kb on - strandat 1898.951 kb on - strandat 1898.952 kb on - strandat 1898.988 kb on - strandat 1899.065 kb on - strandat 1899.149 kb on - strandat 1899.196 kb on + strandat 1899.204 kb on - strandat 1899.291 kb on + strand, within Shewana3_1614at 1899.292 kb on - strand, within Shewana3_1614at 1899.448 kb on + strand, within Shewana3_1614at 1899.503 kb on - strand, within Shewana3_1614at 1899.568 kb on + strand, within Shewana3_1614at 1899.710 kb on + strandat 1899.710 kb on + strandat 1899.723 kb on - strandat 1899.815 kb on + strandat 1899.915 kb on + strand, within Shewana3_1615at 1899.990 kb on + strand, within Shewana3_1615at 1900.089 kb on + strand, within Shewana3_1615at 1900.089 kb on + strand, within Shewana3_1615at 1900.097 kb on - strand, within Shewana3_1615at 1900.097 kb on - strand, within Shewana3_1615at 1900.097 kb on - strand, within Shewana3_1615at 1900.100 kb on + strand, within Shewana3_1615at 1900.108 kb on - strand, within Shewana3_1615at 1900.118 kb on - strand, within Shewana3_1615at 1900.138 kb on + strandat 1900.169 kb on - strandat 1900.169 kb on - strandat 1900.312 kb on - strandat 1900.334 kb on - strandat 1900.351 kb on + strandat 1900.351 kb on + strandat 1900.351 kb on + strandat 1900.351 kb on + strandat 1900.351 kb on + strandat 1900.359 kb on - strandat 1900.359 kb on - strandat 1900.359 kb on - strandat 1900.359 kb on - strandat 1900.386 kb on - strandat 1900.400 kb on + strandat 1900.400 kb on + strandat 1900.408 kb on - strandat 1900.408 kb on - strandat 1900.449 kb on - strandat 1900.456 kb on + strandat 1900.464 kb on - strandat 1900.464 kb on - strandat 1900.464 kb on - strandat 1900.475 kb on + strandat 1900.483 kb on - strandat 1900.511 kb on + strandat 1900.511 kb on + strandat 1900.511 kb on + strandat 1900.511 kb on + strandat 1900.511 kb on + strandat 1900.511 kb on + strandat 1900.519 kb on - strandat 1900.519 kb on - strandat 1900.519 kb on - strandat 1900.519 kb on - strandat 1900.524 kb on - strandat 1900.543 kb on + strandat 1900.544 kb on - strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.553 kb on + strandat 1900.555 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.561 kb on - strandat 1900.625 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,898,438 + Shewana3_1613 0.86 -0.9
1,898,446 - Shewana3_1613 0.86 +0.4
1,898,455 + Shewana3_1613 0.87 +1.9
1,898,537 + -1.4
1,898,537 + -0.9
1,898,574 + -0.6
1,898,635 + +0.8
1,898,635 + +0.4
1,898,635 + -0.5
1,898,635 + +0.8
1,898,635 + +1.5
1,898,643 - +0.4
1,898,643 - +0.4
1,898,643 - +0.4
1,898,670 - +0.9
1,898,798 + +0.5
1,898,808 + +0.5
1,898,832 + -1.5
1,898,832 + +1.1
1,898,850 - +0.9
1,898,863 + +0.7
1,898,875 + +0.1
1,898,901 + +1.9
1,898,943 + +0.9
1,898,950 - +0.4
1,898,951 - +1.9
1,898,952 - -0.6
1,898,988 - -0.4
1,899,065 - +0.4
1,899,149 - +1.3
1,899,196 + -0.4
1,899,204 - -0.6
1,899,291 + Shewana3_1614 0.11 +0.9
1,899,292 - Shewana3_1614 0.11 +1.9
1,899,448 + Shewana3_1614 0.53 -1.8
1,899,503 - Shewana3_1614 0.67 +1.4
1,899,568 + Shewana3_1614 0.85 -0.6
1,899,710 + -0.5
1,899,710 + -0.7
1,899,723 - +1.4
1,899,815 + +3.5
1,899,915 + Shewana3_1615 0.13 +0.6
1,899,990 + Shewana3_1615 0.40 +0.4
1,900,089 + Shewana3_1615 0.76 +1.9
1,900,089 + Shewana3_1615 0.76 -1.2
1,900,097 - Shewana3_1615 0.79 -1.1
1,900,097 - Shewana3_1615 0.79 -0.8
1,900,097 - Shewana3_1615 0.79 +0.1
1,900,100 + Shewana3_1615 0.80 +1.9
1,900,108 - Shewana3_1615 0.83 -0.6
1,900,118 - Shewana3_1615 0.86 -0.1
1,900,138 + +1.2
1,900,169 - -2.5
1,900,169 - -1.0
1,900,312 - +0.9
1,900,334 - -0.1
1,900,351 + +0.9
1,900,351 + +1.4
1,900,351 + +0.4
1,900,351 + +1.9
1,900,351 + -0.6
1,900,359 - -0.1
1,900,359 - +0.9
1,900,359 - -0.6
1,900,359 - +2.9
1,900,386 - -1.4
1,900,400 + +1.9
1,900,400 + +1.9
1,900,408 - -0.1
1,900,408 - +1.9
1,900,449 - +0.9
1,900,456 + +1.9
1,900,464 - +0.9
1,900,464 - -0.4
1,900,464 - +0.9
1,900,475 + -1.1
1,900,483 - -1.8
1,900,511 + +1.9
1,900,511 + +1.4
1,900,511 + -2.5
1,900,511 + +0.5
1,900,511 + -0.2
1,900,511 + -0.5
1,900,519 - -0.6
1,900,519 - -0.6
1,900,519 - +1.4
1,900,519 - +0.9
1,900,524 - -1.1
1,900,543 + -2.1
1,900,544 - +1.3
1,900,553 + +0.9
1,900,553 + +0.4
1,900,553 + +0.9
1,900,553 + +1.9
1,900,553 + +1.9
1,900,553 + +0.4
1,900,553 + +0.4
1,900,553 + +0.2
1,900,553 + -0.9
1,900,553 + +0.4
1,900,553 + -0.4
1,900,553 + +1.4
1,900,553 + -0.4
1,900,553 + -0.1
1,900,553 + +1.4
1,900,555 - -0.4
1,900,561 - +0.5
1,900,561 - +1.9
1,900,561 - +1.9
1,900,561 - +0.9
1,900,561 - +2.4
1,900,561 - +0.4
1,900,561 - +1.3
1,900,561 - +0.4
1,900,561 - +0.9
1,900,561 - +0.0
1,900,561 - +1.9
1,900,561 - -1.1
1,900,561 - -1.4
1,900,561 - -0.9
1,900,561 - -2.4
1,900,561 - -1.8
1,900,561 - +1.4
1,900,561 - +0.4
1,900,561 - +0.9
1,900,561 - +0.9
1,900,561 - -1.8
1,900,625 + -1.2

Or see this region's nucleotide sequence