Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0082 and Shewana3_1611 are separated by 928 nucleotides Shewana3_1611 and Shewana3_1612 are separated by 563 nucleotides
Shewana3_R0082: Shewana3_R0082 - tRNA-Leu (RefSeq), at 1,892,953 to 1,893,039
_R0082
Shewana3_1611: Shewana3_1611 - hypothetical protein (RefSeq), at 1,893,968 to 1,894,246
_1611
Shewana3_1612: Shewana3_1612 - hypothetical protein (RefSeq), at 1,894,810 to 1,896,678
_1612
Position (kb)
1893
1894
1895 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1893.016 kb on + strand, within Shewana3_R0082 at 1893.282 kb on + strand at 1893.559 kb on + strand at 1893.585 kb on - strand at 1893.606 kb on + strand at 1893.698 kb on + strand at 1893.721 kb on - strand at 1894.053 kb on + strand, within Shewana3_1611 at 1894.058 kb on + strand, within Shewana3_1611 at 1894.058 kb on + strand, within Shewana3_1611 at 1894.063 kb on + strand, within Shewana3_1611 at 1894.063 kb on + strand, within Shewana3_1611 at 1894.063 kb on + strand, within Shewana3_1611 at 1894.063 kb on + strand, within Shewana3_1611 at 1894.066 kb on - strand, within Shewana3_1611 at 1894.066 kb on - strand, within Shewana3_1611 at 1894.071 kb on - strand, within Shewana3_1611 at 1894.071 kb on - strand at 1894.454 kb on + strand at 1894.454 kb on + strand at 1894.459 kb on + strand at 1894.459 kb on + strand at 1894.516 kb on - strand at 1894.645 kb on - strand at 1894.807 kb on - strand at 1894.842 kb on - strand at 1894.859 kb on - strand at 1894.916 kb on - strand at 1894.981 kb on + strand at 1894.981 kb on + strand at 1895.016 kb on + strand, within Shewana3_1612 at 1895.024 kb on - strand, within Shewana3_1612 at 1895.071 kb on - strand, within Shewana3_1612 at 1895.135 kb on + strand, within Shewana3_1612 at 1895.219 kb on - strand, within Shewana3_1612 at 1895.232 kb on + strand, within Shewana3_1612
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,893,016 + Shewana3_R0082 0.72 +0.3 1,893,282 + +0.9 1,893,559 + +1.9 1,893,585 - +0.6 1,893,606 + +1.9 1,893,698 + -0.1 1,893,721 - +1.9 1,894,053 + Shewana3_1611 0.30 +1.9 1,894,058 + Shewana3_1611 0.32 -0.9 1,894,058 + Shewana3_1611 0.32 -0.9 1,894,063 + Shewana3_1611 0.34 -0.1 1,894,063 + Shewana3_1611 0.34 -0.1 1,894,063 + Shewana3_1611 0.34 -1.1 1,894,063 + Shewana3_1611 0.34 -0.6 1,894,066 - Shewana3_1611 0.35 +0.9 1,894,066 - Shewana3_1611 0.35 -0.1 1,894,071 - Shewana3_1611 0.37 +1.9 1,894,071 - +1.9 1,894,454 + +1.9 1,894,454 + -1.1 1,894,459 + +1.4 1,894,459 + -0.4 1,894,516 - +2.9 1,894,645 - -0.3 1,894,807 - +0.9 1,894,842 - +0.4 1,894,859 - -0.1 1,894,916 - +0.9 1,894,981 + -0.9 1,894,981 + +0.9 1,895,016 + Shewana3_1612 0.11 +1.9 1,895,024 - Shewana3_1612 0.11 -0.6 1,895,071 - Shewana3_1612 0.14 -0.1 1,895,135 + Shewana3_1612 0.17 +0.9 1,895,219 - Shewana3_1612 0.22 +0.4 1,895,232 + Shewana3_1612 0.23 +0.9
Or see this region's nucleotide sequence