Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0073

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0072 and Shewana3_R0073 are separated by 175 nucleotidesShewana3_R0073 and Shewana3_1584 are separated by 259 nucleotides Shewana3_R0072: Shewana3_R0072 - 23S ribosomal RNA (RefSeq), at 1,855,447 to 1,858,341 _R0072 Shewana3_R0073: Shewana3_R0073 - 5S ribosomal RNA (RefSeq), at 1,858,517 to 1,858,636 _R0073 Shewana3_1584: Shewana3_1584 - hypothetical protein (RefSeq), at 1,858,896 to 1,859,612 _1584 Position (kb) 1858 1859Strain fitness (log2 ratio) -1 0 1at 1858.848 kb on + strandat 1859.008 kb on + strand, within Shewana3_1584at 1859.037 kb on - strand, within Shewana3_1584at 1859.054 kb on - strand, within Shewana3_1584at 1859.087 kb on + strand, within Shewana3_1584at 1859.281 kb on + strand, within Shewana3_1584

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,858,848 + -0.4
1,859,008 + Shewana3_1584 0.16 -1.3
1,859,037 - Shewana3_1584 0.20 -0.0
1,859,054 - Shewana3_1584 0.22 +0.4
1,859,087 + Shewana3_1584 0.27 -0.0
1,859,281 + Shewana3_1584 0.54 -0.3

Or see this region's nucleotide sequence