Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1564

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1563 and Shewana3_1564 are separated by 170 nucleotidesShewana3_1564 and Shewana3_1565 are separated by 59 nucleotides Shewana3_1563: Shewana3_1563 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,825,843 to 1,826,970 _1563 Shewana3_1564: Shewana3_1564 - hypothetical protein (RefSeq), at 1,827,141 to 1,827,590 _1564 Shewana3_1565: Shewana3_1565 - hypothetical protein (RefSeq), at 1,827,650 to 1,830,049 _1565 Position (kb) 1827 1828Strain fitness (log2 ratio) -1 0 1at 1826.186 kb on - strand, within Shewana3_1563at 1826.281 kb on + strand, within Shewana3_1563at 1826.489 kb on + strand, within Shewana3_1563at 1826.489 kb on + strand, within Shewana3_1563at 1826.813 kb on + strand, within Shewana3_1563at 1826.813 kb on + strand, within Shewana3_1563at 1826.815 kb on + strand, within Shewana3_1563at 1826.889 kb on + strandat 1826.939 kb on - strandat 1826.956 kb on - strandat 1827.149 kb on + strandat 1827.157 kb on - strandat 1827.179 kb on + strandat 1827.278 kb on + strand, within Shewana3_1564at 1827.295 kb on + strand, within Shewana3_1564at 1827.342 kb on + strand, within Shewana3_1564at 1827.350 kb on - strand, within Shewana3_1564at 1827.383 kb on + strand, within Shewana3_1564at 1827.383 kb on + strand, within Shewana3_1564at 1827.383 kb on + strand, within Shewana3_1564at 1827.499 kb on + strand, within Shewana3_1564at 1827.499 kb on + strand, within Shewana3_1564at 1827.502 kb on - strand, within Shewana3_1564at 1827.507 kb on - strand, within Shewana3_1564at 1827.543 kb on - strand, within Shewana3_1564at 1827.616 kb on + strandat 1828.102 kb on + strand, within Shewana3_1565at 1828.148 kb on + strand, within Shewana3_1565at 1828.210 kb on - strand, within Shewana3_1565at 1828.244 kb on + strand, within Shewana3_1565at 1828.256 kb on - strand, within Shewana3_1565

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,826,186 - Shewana3_1563 0.30 -0.6
1,826,281 + Shewana3_1563 0.39 +0.7
1,826,489 + Shewana3_1563 0.57 +1.4
1,826,489 + Shewana3_1563 0.57 +0.6
1,826,813 + Shewana3_1563 0.86 +0.5
1,826,813 + Shewana3_1563 0.86 +0.7
1,826,815 + Shewana3_1563 0.86 +0.0
1,826,889 + +0.3
1,826,939 - +0.7
1,826,956 - +0.4
1,827,149 + +0.3
1,827,157 - -0.7
1,827,179 + -1.1
1,827,278 + Shewana3_1564 0.30 +0.2
1,827,295 + Shewana3_1564 0.34 +1.0
1,827,342 + Shewana3_1564 0.45 -0.0
1,827,350 - Shewana3_1564 0.46 +0.7
1,827,383 + Shewana3_1564 0.54 +0.7
1,827,383 + Shewana3_1564 0.54 +0.3
1,827,383 + Shewana3_1564 0.54 +0.7
1,827,499 + Shewana3_1564 0.80 +0.7
1,827,499 + Shewana3_1564 0.80 +1.0
1,827,502 - Shewana3_1564 0.80 -0.5
1,827,507 - Shewana3_1564 0.81 +1.4
1,827,543 - Shewana3_1564 0.89 -0.6
1,827,616 + -0.4
1,828,102 + Shewana3_1565 0.19 +0.6
1,828,148 + Shewana3_1565 0.21 +0.0
1,828,210 - Shewana3_1565 0.23 -0.9
1,828,244 + Shewana3_1565 0.25 +1.0
1,828,256 - Shewana3_1565 0.25 -1.5

Or see this region's nucleotide sequence