Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1563 and Shewana3_1564 are separated by 170 nucleotides Shewana3_1564 and Shewana3_1565 are separated by 59 nucleotides
Shewana3_1563: Shewana3_1563 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,825,843 to 1,826,970
_1563
Shewana3_1564: Shewana3_1564 - hypothetical protein (RefSeq), at 1,827,141 to 1,827,590
_1564
Shewana3_1565: Shewana3_1565 - hypothetical protein (RefSeq), at 1,827,650 to 1,830,049
_1565
Position (kb)
1827
1828 Strain fitness (log2 ratio)
-1
0
1 at 1826.186 kb on - strand, within Shewana3_1563 at 1826.281 kb on + strand, within Shewana3_1563 at 1826.489 kb on + strand, within Shewana3_1563 at 1826.489 kb on + strand, within Shewana3_1563 at 1826.813 kb on + strand, within Shewana3_1563 at 1826.813 kb on + strand, within Shewana3_1563 at 1826.815 kb on + strand, within Shewana3_1563 at 1826.889 kb on + strand at 1826.939 kb on - strand at 1826.956 kb on - strand at 1827.149 kb on + strand at 1827.157 kb on - strand at 1827.179 kb on + strand at 1827.278 kb on + strand, within Shewana3_1564 at 1827.295 kb on + strand, within Shewana3_1564 at 1827.342 kb on + strand, within Shewana3_1564 at 1827.350 kb on - strand, within Shewana3_1564 at 1827.383 kb on + strand, within Shewana3_1564 at 1827.383 kb on + strand, within Shewana3_1564 at 1827.383 kb on + strand, within Shewana3_1564 at 1827.499 kb on + strand, within Shewana3_1564 at 1827.499 kb on + strand, within Shewana3_1564 at 1827.502 kb on - strand, within Shewana3_1564 at 1827.507 kb on - strand, within Shewana3_1564 at 1827.543 kb on - strand, within Shewana3_1564 at 1827.616 kb on + strand at 1828.102 kb on + strand, within Shewana3_1565 at 1828.148 kb on + strand, within Shewana3_1565 at 1828.210 kb on - strand, within Shewana3_1565 at 1828.244 kb on + strand, within Shewana3_1565 at 1828.256 kb on - strand, within Shewana3_1565
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,826,186 - Shewana3_1563 0.30 -0.6 1,826,281 + Shewana3_1563 0.39 +0.7 1,826,489 + Shewana3_1563 0.57 +1.4 1,826,489 + Shewana3_1563 0.57 +0.6 1,826,813 + Shewana3_1563 0.86 +0.5 1,826,813 + Shewana3_1563 0.86 +0.7 1,826,815 + Shewana3_1563 0.86 +0.0 1,826,889 + +0.3 1,826,939 - +0.7 1,826,956 - +0.4 1,827,149 + +0.3 1,827,157 - -0.7 1,827,179 + -1.1 1,827,278 + Shewana3_1564 0.30 +0.2 1,827,295 + Shewana3_1564 0.34 +1.0 1,827,342 + Shewana3_1564 0.45 -0.0 1,827,350 - Shewana3_1564 0.46 +0.7 1,827,383 + Shewana3_1564 0.54 +0.7 1,827,383 + Shewana3_1564 0.54 +0.3 1,827,383 + Shewana3_1564 0.54 +0.7 1,827,499 + Shewana3_1564 0.80 +0.7 1,827,499 + Shewana3_1564 0.80 +1.0 1,827,502 - Shewana3_1564 0.80 -0.5 1,827,507 - Shewana3_1564 0.81 +1.4 1,827,543 - Shewana3_1564 0.89 -0.6 1,827,616 + -0.4 1,828,102 + Shewana3_1565 0.19 +0.6 1,828,148 + Shewana3_1565 0.21 +0.0 1,828,210 - Shewana3_1565 0.23 -0.9 1,828,244 + Shewana3_1565 0.25 +1.0 1,828,256 - Shewana3_1565 0.25 -1.5
Or see this region's nucleotide sequence