Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1553 and pflA are separated by 15 nucleotides pflA and Shewana3_1555 are separated by 63 nucleotides
Shewana3_1553: Shewana3_1553 - hypothetical protein (RefSeq), at 1,809,984 to 1,810,481
_1553
Shewana3_1554: pflA - pyruvate formate lyase-activating enzyme 1 (RefSeq), at 1,810,497 to 1,811,237
pflA
Shewana3_1555: Shewana3_1555 - formate acetyltransferase (RefSeq), at 1,811,301 to 1,813,583
_1555
Position (kb)
1811
1812
1813
1814 Strain fitness (log2 ratio)
-1
0
1
2 at 1810.475 kb on + strand at 1810.568 kb on - strand at 1810.797 kb on - strand, within pflA at 1810.865 kb on - strand, within pflA at 1810.965 kb on - strand, within pflA at 1811.141 kb on + strand, within pflA at 1811.156 kb on + strand, within pflA at 1811.318 kb on + strand at 1811.374 kb on + strand at 1811.382 kb on - strand at 1811.660 kb on + strand, within Shewana3_1555 at 1811.712 kb on - strand, within Shewana3_1555 at 1811.779 kb on - strand, within Shewana3_1555 at 1811.944 kb on + strand, within Shewana3_1555 at 1812.029 kb on + strand, within Shewana3_1555 at 1812.106 kb on + strand, within Shewana3_1555 at 1812.387 kb on - strand, within Shewana3_1555 at 1812.397 kb on - strand, within Shewana3_1555 at 1812.397 kb on - strand, within Shewana3_1555 at 1812.397 kb on - strand, within Shewana3_1555 at 1812.694 kb on - strand, within Shewana3_1555 at 1812.984 kb on - strand, within Shewana3_1555 at 1812.984 kb on - strand, within Shewana3_1555 at 1813.041 kb on + strand, within Shewana3_1555 at 1813.062 kb on + strand, within Shewana3_1555 at 1813.163 kb on + strand, within Shewana3_1555 at 1813.163 kb on + strand, within Shewana3_1555 at 1813.163 kb on + strand at 1813.171 kb on - strand, within Shewana3_1555 at 1813.171 kb on - strand, within Shewana3_1555 at 1813.229 kb on - strand, within Shewana3_1555 at 1813.279 kb on - strand, within Shewana3_1555 at 1813.314 kb on + strand, within Shewana3_1555 at 1813.680 kb on + strand at 1813.860 kb on - strand at 1813.942 kb on - strand at 1814.030 kb on - strand at 1814.059 kb on - strand at 1814.284 kb on - strand at 1814.527 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,810,475 + -0.7 1,810,568 - +1.0 1,810,797 - pflA Shewana3_1554 0.40 -0.1 1,810,865 - pflA Shewana3_1554 0.50 +0.7 1,810,965 - pflA Shewana3_1554 0.63 +0.1 1,811,141 + pflA Shewana3_1554 0.87 +1.6 1,811,156 + pflA Shewana3_1554 0.89 -0.4 1,811,318 + +0.3 1,811,374 + -0.1 1,811,382 - +0.1 1,811,660 + Shewana3_1555 0.16 +0.3 1,811,712 - Shewana3_1555 0.18 +0.2 1,811,779 - Shewana3_1555 0.21 +1.1 1,811,944 + Shewana3_1555 0.28 +0.4 1,812,029 + Shewana3_1555 0.32 -0.4 1,812,106 + Shewana3_1555 0.35 +0.4 1,812,387 - Shewana3_1555 0.48 +1.0 1,812,397 - Shewana3_1555 0.48 +0.6 1,812,397 - Shewana3_1555 0.48 -0.3 1,812,397 - Shewana3_1555 0.48 +0.4 1,812,694 - Shewana3_1555 0.61 +0.9 1,812,984 - Shewana3_1555 0.74 +0.4 1,812,984 - Shewana3_1555 0.74 +0.8 1,813,041 + Shewana3_1555 0.76 -0.6 1,813,062 + Shewana3_1555 0.77 -1.2 1,813,163 + Shewana3_1555 0.82 +0.4 1,813,163 + Shewana3_1555 0.82 +0.9 1,813,163 + +1.9 1,813,171 - Shewana3_1555 0.82 +0.9 1,813,171 - Shewana3_1555 0.82 +1.2 1,813,229 - Shewana3_1555 0.84 +0.7 1,813,279 - Shewana3_1555 0.87 -0.6 1,813,314 + Shewana3_1555 0.88 +0.4 1,813,680 + -0.4 1,813,860 - +0.9 1,813,942 - +0.2 1,814,030 - +0.4 1,814,059 - -0.2 1,814,284 - -1.5 1,814,527 + +1.2
Or see this region's nucleotide sequence