Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1500 and Shewana3_1501 are separated by 212 nucleotides Shewana3_1501 and Shewana3_1502 are separated by 128 nucleotides Shewana3_1502 and Shewana3_1503 are separated by 239 nucleotides
Shewana3_1500: Shewana3_1500 - hypothetical protein (RefSeq), at 1,748,713 to 1,749,120
_1500
Shewana3_1501: Shewana3_1501 - GCN5-related N-acetyltransferase (RefSeq), at 1,749,333 to 1,749,875
_1501
Shewana3_1502: Shewana3_1502 - hypothetical protein (RefSeq), at 1,750,004 to 1,750,435
_1502
Shewana3_1503: Shewana3_1503 - exonuclease III (RefSeq), at 1,750,675 to 1,751,487
_1503
Position (kb)
1749
1750 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1748.464 kb on + strand at 1748.497 kb on + strand at 1748.505 kb on - strand at 1748.659 kb on + strand at 1748.667 kb on - strand at 1748.718 kb on - strand at 1748.720 kb on + strand at 1748.720 kb on + strand at 1748.728 kb on - strand at 1748.870 kb on + strand, within Shewana3_1500 at 1748.892 kb on + strand, within Shewana3_1500 at 1748.897 kb on + strand, within Shewana3_1500 at 1748.949 kb on - strand, within Shewana3_1500 at 1749.023 kb on + strand, within Shewana3_1500 at 1749.127 kb on - strand at 1749.151 kb on - strand at 1749.192 kb on + strand at 1749.197 kb on + strand at 1749.220 kb on - strand at 1749.238 kb on + strand at 1749.327 kb on + strand at 1749.327 kb on + strand at 1749.335 kb on - strand at 1749.335 kb on - strand at 1749.462 kb on + strand, within Shewana3_1501 at 1749.463 kb on + strand, within Shewana3_1501 at 1749.463 kb on + strand, within Shewana3_1501 at 1749.463 kb on + strand, within Shewana3_1501 at 1749.529 kb on + strand, within Shewana3_1501 at 1749.529 kb on + strand, within Shewana3_1501 at 1749.529 kb on + strand, within Shewana3_1501 at 1749.537 kb on - strand, within Shewana3_1501 at 1749.553 kb on + strand, within Shewana3_1501 at 1749.700 kb on + strand, within Shewana3_1501 at 1749.759 kb on + strand, within Shewana3_1501 at 1749.759 kb on + strand, within Shewana3_1501 at 1749.793 kb on + strand, within Shewana3_1501 at 1749.805 kb on + strand, within Shewana3_1501 at 1749.812 kb on + strand, within Shewana3_1501 at 1749.813 kb on - strand, within Shewana3_1501 at 1749.876 kb on + strand at 1749.884 kb on + strand at 1750.127 kb on + strand, within Shewana3_1502 at 1750.133 kb on + strand, within Shewana3_1502 at 1750.133 kb on + strand, within Shewana3_1502 at 1750.404 kb on + strand at 1750.514 kb on + strand at 1750.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,748,464 + -0.9 1,748,497 + -1.5 1,748,505 - +0.5 1,748,659 + -0.8 1,748,667 - +1.9 1,748,718 - +0.9 1,748,720 + -0.4 1,748,720 + +1.6 1,748,728 - -0.4 1,748,870 + Shewana3_1500 0.38 -1.1 1,748,892 + Shewana3_1500 0.44 +1.1 1,748,897 + Shewana3_1500 0.45 -1.2 1,748,949 - Shewana3_1500 0.58 +0.9 1,749,023 + Shewana3_1500 0.76 -0.5 1,749,127 - -0.4 1,749,151 - -0.1 1,749,192 + +1.7 1,749,197 + +1.0 1,749,220 - -1.9 1,749,238 + +0.2 1,749,327 + +0.6 1,749,327 + +0.3 1,749,335 - -0.1 1,749,335 - +0.9 1,749,462 + Shewana3_1501 0.24 +1.4 1,749,463 + Shewana3_1501 0.24 -1.6 1,749,463 + Shewana3_1501 0.24 -0.2 1,749,463 + Shewana3_1501 0.24 +0.0 1,749,529 + Shewana3_1501 0.36 +0.8 1,749,529 + Shewana3_1501 0.36 +0.2 1,749,529 + Shewana3_1501 0.36 -1.3 1,749,537 - Shewana3_1501 0.38 -0.1 1,749,553 + Shewana3_1501 0.41 -0.0 1,749,700 + Shewana3_1501 0.68 +1.4 1,749,759 + Shewana3_1501 0.78 +0.7 1,749,759 + Shewana3_1501 0.78 +0.8 1,749,793 + Shewana3_1501 0.85 -1.1 1,749,805 + Shewana3_1501 0.87 +0.5 1,749,812 + Shewana3_1501 0.88 +0.8 1,749,813 - Shewana3_1501 0.88 -1.2 1,749,876 + +0.6 1,749,884 + -0.8 1,750,127 + Shewana3_1502 0.28 +0.3 1,750,133 + Shewana3_1502 0.30 -0.2 1,750,133 + Shewana3_1502 0.30 +0.4 1,750,404 + +0.8 1,750,514 + -0.6 1,750,683 + -1.8
Or see this region's nucleotide sequence