Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1426 and Shewana3_1427 are separated by 76 nucleotides Shewana3_1427 and Shewana3_1428 are separated by 52 nucleotides
Shewana3_1426: Shewana3_1426 - serine/threonine transporter SstT (RefSeq), at 1,656,394 to 1,657,620
_1426
Shewana3_1427: Shewana3_1427 - hypothetical protein (RefSeq), at 1,657,697 to 1,658,221
_1427
Shewana3_1428: Shewana3_1428 - oxidoreductase domain-containing protein (RefSeq), at 1,658,274 to 1,659,653
_1428
Position (kb)
1657
1658
1659 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1656.731 kb on + strand, within Shewana3_1426 at 1656.746 kb on + strand, within Shewana3_1426 at 1656.866 kb on + strand, within Shewana3_1426 at 1656.871 kb on + strand, within Shewana3_1426 at 1656.871 kb on + strand, within Shewana3_1426 at 1657.046 kb on - strand, within Shewana3_1426 at 1657.048 kb on + strand, within Shewana3_1426 at 1657.157 kb on - strand, within Shewana3_1426 at 1657.312 kb on + strand, within Shewana3_1426 at 1657.312 kb on + strand, within Shewana3_1426 at 1657.451 kb on + strand, within Shewana3_1426 at 1657.512 kb on - strand at 1657.556 kb on - strand at 1657.737 kb on - strand at 1657.807 kb on - strand, within Shewana3_1427 at 1657.807 kb on - strand, within Shewana3_1427 at 1657.953 kb on + strand, within Shewana3_1427 at 1657.953 kb on + strand, within Shewana3_1427 at 1658.051 kb on - strand, within Shewana3_1427 at 1658.051 kb on - strand, within Shewana3_1427 at 1658.143 kb on + strand, within Shewana3_1427 at 1658.156 kb on - strand, within Shewana3_1427 at 1658.224 kb on + strand at 1658.335 kb on - strand at 1658.363 kb on + strand at 1658.566 kb on + strand, within Shewana3_1428 at 1658.581 kb on + strand, within Shewana3_1428 at 1658.749 kb on - strand, within Shewana3_1428 at 1658.956 kb on - strand, within Shewana3_1428 at 1659.013 kb on - strand, within Shewana3_1428 at 1659.013 kb on - strand, within Shewana3_1428 at 1659.028 kb on + strand, within Shewana3_1428 at 1659.152 kb on - strand, within Shewana3_1428 at 1659.203 kb on + strand, within Shewana3_1428 at 1659.206 kb on - strand, within Shewana3_1428
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,656,731 + Shewana3_1426 0.27 -1.0 1,656,746 + Shewana3_1426 0.29 -0.6 1,656,866 + Shewana3_1426 0.38 +0.5 1,656,871 + Shewana3_1426 0.39 +0.1 1,656,871 + Shewana3_1426 0.39 +0.6 1,657,046 - Shewana3_1426 0.53 -0.1 1,657,048 + Shewana3_1426 0.53 +0.2 1,657,157 - Shewana3_1426 0.62 +0.0 1,657,312 + Shewana3_1426 0.75 +0.4 1,657,312 + Shewana3_1426 0.75 +0.6 1,657,451 + Shewana3_1426 0.86 -0.7 1,657,512 - +0.2 1,657,556 - -0.5 1,657,737 - -1.7 1,657,807 - Shewana3_1427 0.21 -2.4 1,657,807 - Shewana3_1427 0.21 -0.8 1,657,953 + Shewana3_1427 0.49 +1.2 1,657,953 + Shewana3_1427 0.49 -0.2 1,658,051 - Shewana3_1427 0.67 -2.9 1,658,051 - Shewana3_1427 0.67 -0.5 1,658,143 + Shewana3_1427 0.85 +0.2 1,658,156 - Shewana3_1427 0.87 +0.2 1,658,224 + +0.2 1,658,335 - -1.0 1,658,363 + +0.8 1,658,566 + Shewana3_1428 0.21 -0.1 1,658,581 + Shewana3_1428 0.22 -1.8 1,658,749 - Shewana3_1428 0.34 -0.5 1,658,956 - Shewana3_1428 0.49 +0.8 1,659,013 - Shewana3_1428 0.54 -1.8 1,659,013 - Shewana3_1428 0.54 -1.3 1,659,028 + Shewana3_1428 0.55 -1.0 1,659,152 - Shewana3_1428 0.64 +0.7 1,659,203 + Shewana3_1428 0.67 -0.4 1,659,206 - Shewana3_1428 0.68 +0.8
Or see this region's nucleotide sequence