Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1427

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1426 and Shewana3_1427 are separated by 76 nucleotidesShewana3_1427 and Shewana3_1428 are separated by 52 nucleotides Shewana3_1426: Shewana3_1426 - serine/threonine transporter SstT (RefSeq), at 1,656,394 to 1,657,620 _1426 Shewana3_1427: Shewana3_1427 - hypothetical protein (RefSeq), at 1,657,697 to 1,658,221 _1427 Shewana3_1428: Shewana3_1428 - oxidoreductase domain-containing protein (RefSeq), at 1,658,274 to 1,659,653 _1428 Position (kb) 1657 1658 1659Strain fitness (log2 ratio) -3 -2 -1 0 1at 1656.731 kb on + strand, within Shewana3_1426at 1656.746 kb on + strand, within Shewana3_1426at 1656.866 kb on + strand, within Shewana3_1426at 1656.871 kb on + strand, within Shewana3_1426at 1656.871 kb on + strand, within Shewana3_1426at 1657.046 kb on - strand, within Shewana3_1426at 1657.048 kb on + strand, within Shewana3_1426at 1657.157 kb on - strand, within Shewana3_1426at 1657.312 kb on + strand, within Shewana3_1426at 1657.312 kb on + strand, within Shewana3_1426at 1657.451 kb on + strand, within Shewana3_1426at 1657.512 kb on - strandat 1657.556 kb on - strandat 1657.737 kb on - strandat 1657.807 kb on - strand, within Shewana3_1427at 1657.807 kb on - strand, within Shewana3_1427at 1657.953 kb on + strand, within Shewana3_1427at 1657.953 kb on + strand, within Shewana3_1427at 1658.051 kb on - strand, within Shewana3_1427at 1658.051 kb on - strand, within Shewana3_1427at 1658.143 kb on + strand, within Shewana3_1427at 1658.156 kb on - strand, within Shewana3_1427at 1658.224 kb on + strandat 1658.335 kb on - strandat 1658.363 kb on + strandat 1658.566 kb on + strand, within Shewana3_1428at 1658.581 kb on + strand, within Shewana3_1428at 1658.749 kb on - strand, within Shewana3_1428at 1658.956 kb on - strand, within Shewana3_1428at 1659.013 kb on - strand, within Shewana3_1428at 1659.013 kb on - strand, within Shewana3_1428at 1659.028 kb on + strand, within Shewana3_1428at 1659.152 kb on - strand, within Shewana3_1428at 1659.203 kb on + strand, within Shewana3_1428at 1659.206 kb on - strand, within Shewana3_1428

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,656,731 + Shewana3_1426 0.27 -1.0
1,656,746 + Shewana3_1426 0.29 -0.6
1,656,866 + Shewana3_1426 0.38 +0.5
1,656,871 + Shewana3_1426 0.39 +0.1
1,656,871 + Shewana3_1426 0.39 +0.6
1,657,046 - Shewana3_1426 0.53 -0.1
1,657,048 + Shewana3_1426 0.53 +0.2
1,657,157 - Shewana3_1426 0.62 +0.0
1,657,312 + Shewana3_1426 0.75 +0.4
1,657,312 + Shewana3_1426 0.75 +0.6
1,657,451 + Shewana3_1426 0.86 -0.7
1,657,512 - +0.2
1,657,556 - -0.5
1,657,737 - -1.7
1,657,807 - Shewana3_1427 0.21 -2.4
1,657,807 - Shewana3_1427 0.21 -0.8
1,657,953 + Shewana3_1427 0.49 +1.2
1,657,953 + Shewana3_1427 0.49 -0.2
1,658,051 - Shewana3_1427 0.67 -2.9
1,658,051 - Shewana3_1427 0.67 -0.5
1,658,143 + Shewana3_1427 0.85 +0.2
1,658,156 - Shewana3_1427 0.87 +0.2
1,658,224 + +0.2
1,658,335 - -1.0
1,658,363 + +0.8
1,658,566 + Shewana3_1428 0.21 -0.1
1,658,581 + Shewana3_1428 0.22 -1.8
1,658,749 - Shewana3_1428 0.34 -0.5
1,658,956 - Shewana3_1428 0.49 +0.8
1,659,013 - Shewana3_1428 0.54 -1.8
1,659,013 - Shewana3_1428 0.54 -1.3
1,659,028 + Shewana3_1428 0.55 -1.0
1,659,152 - Shewana3_1428 0.64 +0.7
1,659,203 + Shewana3_1428 0.67 -0.4
1,659,206 - Shewana3_1428 0.68 +0.8

Or see this region's nucleotide sequence