Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1412 and Shewana3_1413 overlap by 4 nucleotides Shewana3_1413 and Shewana3_1414 are separated by 98 nucleotides
Shewana3_1412: Shewana3_1412 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 1,635,442 to 1,636,821
_1412
Shewana3_1413: Shewana3_1413 - ATPase domain-containing protein (RefSeq), at 1,636,818 to 1,638,629
_1413
Shewana3_1414: Shewana3_1414 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,638,728 to 1,640,125
_1414
Position (kb)
1636
1637
1638
1639 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1636.232 kb on - strand, within Shewana3_1412 at 1636.331 kb on - strand, within Shewana3_1412 at 1636.386 kb on + strand, within Shewana3_1412 at 1636.483 kb on + strand, within Shewana3_1412 at 1636.819 kb on + strand at 1636.906 kb on - strand at 1636.966 kb on - strand at 1637.072 kb on + strand, within Shewana3_1413 at 1637.244 kb on + strand, within Shewana3_1413 at 1637.468 kb on + strand, within Shewana3_1413 at 1637.529 kb on - strand, within Shewana3_1413 at 1637.585 kb on - strand, within Shewana3_1413 at 1637.713 kb on + strand, within Shewana3_1413 at 1637.774 kb on + strand, within Shewana3_1413 at 1637.841 kb on - strand, within Shewana3_1413 at 1638.127 kb on + strand, within Shewana3_1413 at 1638.178 kb on - strand, within Shewana3_1413 at 1638.178 kb on - strand, within Shewana3_1413 at 1638.180 kb on - strand, within Shewana3_1413 at 1638.208 kb on + strand, within Shewana3_1413 at 1638.208 kb on + strand, within Shewana3_1413 at 1638.208 kb on + strand, within Shewana3_1413 at 1638.285 kb on + strand, within Shewana3_1413 at 1638.350 kb on + strand, within Shewana3_1413 at 1638.350 kb on + strand, within Shewana3_1413 at 1638.807 kb on + strand at 1638.817 kb on + strand at 1638.822 kb on + strand at 1638.832 kb on + strand at 1638.897 kb on - strand, within Shewana3_1414 at 1638.929 kb on - strand, within Shewana3_1414 at 1639.077 kb on - strand, within Shewana3_1414 at 1639.093 kb on + strand, within Shewana3_1414 at 1639.220 kb on - strand, within Shewana3_1414 at 1639.282 kb on - strand, within Shewana3_1414 at 1639.449 kb on + strand, within Shewana3_1414 at 1639.475 kb on + strand, within Shewana3_1414 at 1639.477 kb on - strand, within Shewana3_1414
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,636,232 - Shewana3_1412 0.57 +0.8 1,636,331 - Shewana3_1412 0.64 -1.9 1,636,386 + Shewana3_1412 0.68 -0.2 1,636,483 + Shewana3_1412 0.75 -0.5 1,636,819 + +1.8 1,636,906 - +0.5 1,636,966 - -1.7 1,637,072 + Shewana3_1413 0.14 -0.0 1,637,244 + Shewana3_1413 0.24 -1.5 1,637,468 + Shewana3_1413 0.36 -1.4 1,637,529 - Shewana3_1413 0.39 -0.2 1,637,585 - Shewana3_1413 0.42 -0.7 1,637,713 + Shewana3_1413 0.49 -2.8 1,637,774 + Shewana3_1413 0.53 -0.4 1,637,841 - Shewana3_1413 0.56 -0.2 1,638,127 + Shewana3_1413 0.72 -0.3 1,638,178 - Shewana3_1413 0.75 +0.1 1,638,178 - Shewana3_1413 0.75 -1.5 1,638,180 - Shewana3_1413 0.75 -1.5 1,638,208 + Shewana3_1413 0.77 +0.8 1,638,208 + Shewana3_1413 0.77 -1.9 1,638,208 + Shewana3_1413 0.77 -2.4 1,638,285 + Shewana3_1413 0.81 -0.6 1,638,350 + Shewana3_1413 0.85 -0.1 1,638,350 + Shewana3_1413 0.85 -0.2 1,638,807 + +1.2 1,638,817 + +1.8 1,638,822 + -0.1 1,638,832 + -2.3 1,638,897 - Shewana3_1414 0.12 -0.1 1,638,929 - Shewana3_1414 0.14 +0.6 1,639,077 - Shewana3_1414 0.25 +0.8 1,639,093 + Shewana3_1414 0.26 +0.4 1,639,220 - Shewana3_1414 0.35 +0.0 1,639,282 - Shewana3_1414 0.40 +0.2 1,639,449 + Shewana3_1414 0.52 -0.5 1,639,475 + Shewana3_1414 0.53 +0.4 1,639,477 - Shewana3_1414 0.54 -1.6
Or see this region's nucleotide sequence