Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1391

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1390 and Shewana3_1391 are separated by 72 nucleotidesShewana3_1391 and Shewana3_1392 overlap by 14 nucleotidesShewana3_1392 and Shewana3_1393 are separated by 24 nucleotides Shewana3_1390: Shewana3_1390 - GAF sensor signal transduction histidine kinase (RefSeq), at 1,604,737 to 1,606,098 _1390 Shewana3_1391: Shewana3_1391 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 1,606,171 to 1,607,109 _1391 Shewana3_1392: Shewana3_1392 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 1,607,096 to 1,607,632 _1392 Shewana3_1393: Shewana3_1393 - protein of unknown function DUF940, membrane lipoprotein putative (RefSeq), at 1,607,657 to 1,610,032 _1393 Position (kb) 1606 1607 1608Strain fitness (log2 ratio) -2 -1 0 1at 1605.282 kb on + strand, within Shewana3_1390at 1605.340 kb on + strand, within Shewana3_1390at 1605.421 kb on + strand, within Shewana3_1390at 1605.451 kb on - strand, within Shewana3_1390at 1605.556 kb on - strand, within Shewana3_1390at 1605.691 kb on - strand, within Shewana3_1390at 1605.891 kb on + strand, within Shewana3_1390at 1605.913 kb on - strand, within Shewana3_1390at 1605.982 kb on + strandat 1606.466 kb on + strand, within Shewana3_1391at 1606.615 kb on + strand, within Shewana3_1391at 1606.765 kb on - strand, within Shewana3_1391at 1606.970 kb on + strand, within Shewana3_1391at 1606.970 kb on + strand, within Shewana3_1391

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,605,282 + Shewana3_1390 0.40 -1.8
1,605,340 + Shewana3_1390 0.44 -0.9
1,605,421 + Shewana3_1390 0.50 +0.4
1,605,451 - Shewana3_1390 0.52 -1.5
1,605,556 - Shewana3_1390 0.60 +0.8
1,605,691 - Shewana3_1390 0.70 +0.8
1,605,891 + Shewana3_1390 0.85 -1.1
1,605,913 - Shewana3_1390 0.86 -0.2
1,605,982 + -0.2
1,606,466 + Shewana3_1391 0.31 -1.7
1,606,615 + Shewana3_1391 0.47 -0.6
1,606,765 - Shewana3_1391 0.63 -0.2
1,606,970 + Shewana3_1391 0.85 -1.6
1,606,970 + Shewana3_1391 0.85 -2.3

Or see this region's nucleotide sequence