Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1389

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1388 and Shewana3_1389 are separated by 95 nucleotidesShewana3_1389 and Shewana3_1390 are separated by 310 nucleotides Shewana3_1388: Shewana3_1388 - hypothetical protein (RefSeq), at 1,603,063 to 1,603,824 _1388 Shewana3_1389: Shewana3_1389 - lipoprotein (RefSeq), at 1,603,920 to 1,604,426 _1389 Shewana3_1390: Shewana3_1390 - GAF sensor signal transduction histidine kinase (RefSeq), at 1,604,737 to 1,606,098 _1390 Position (kb) 1603 1604 1605Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1603.095 kb on + strandat 1603.095 kb on + strandat 1603.103 kb on - strandat 1603.206 kb on + strand, within Shewana3_1388at 1603.275 kb on + strand, within Shewana3_1388at 1603.311 kb on + strand, within Shewana3_1388at 1603.388 kb on + strand, within Shewana3_1388at 1603.398 kb on + strand, within Shewana3_1388at 1603.398 kb on + strand, within Shewana3_1388at 1603.398 kb on + strand, within Shewana3_1388at 1603.406 kb on - strandat 1603.633 kb on - strand, within Shewana3_1388at 1603.866 kb on - strandat 1604.197 kb on - strand, within Shewana3_1389at 1604.302 kb on + strand, within Shewana3_1389at 1604.337 kb on + strand, within Shewana3_1389at 1604.569 kb on + strandat 1604.589 kb on - strandat 1604.617 kb on + strandat 1604.617 kb on - strandat 1604.813 kb on + strandat 1604.821 kb on - strandat 1604.906 kb on + strand, within Shewana3_1390at 1604.914 kb on - strand, within Shewana3_1390at 1604.914 kb on - strand, within Shewana3_1390at 1605.095 kb on + strand, within Shewana3_1390at 1605.282 kb on + strand, within Shewana3_1390at 1605.340 kb on + strand, within Shewana3_1390at 1605.421 kb on + strand, within Shewana3_1390

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,603,095 + +1.8
1,603,095 + -1.2
1,603,103 - +1.8
1,603,206 + Shewana3_1388 0.19 +0.8
1,603,275 + Shewana3_1388 0.28 +0.2
1,603,311 + Shewana3_1388 0.33 +0.8
1,603,388 + Shewana3_1388 0.43 -1.5
1,603,398 + Shewana3_1388 0.44 +1.3
1,603,398 + Shewana3_1388 0.44 -0.2
1,603,398 + Shewana3_1388 0.44 -0.4
1,603,406 - +0.8
1,603,633 - Shewana3_1388 0.75 +0.2
1,603,866 - +1.8
1,604,197 - Shewana3_1389 0.55 -0.4
1,604,302 + Shewana3_1389 0.75 -1.0
1,604,337 + Shewana3_1389 0.82 -1.8
1,604,569 + +1.8
1,604,589 - -0.8
1,604,617 + -0.1
1,604,617 - +0.2
1,604,813 + +0.8
1,604,821 - -0.2
1,604,906 + Shewana3_1390 0.12 +2.4
1,604,914 - Shewana3_1390 0.13 +2.8
1,604,914 - Shewana3_1390 0.13 +0.8
1,605,095 + Shewana3_1390 0.26 +0.8
1,605,282 + Shewana3_1390 0.40 -1.8
1,605,340 + Shewana3_1390 0.44 -0.9
1,605,421 + Shewana3_1390 0.50 +0.4

Or see this region's nucleotide sequence