Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1389
Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.0625 vol% |
---|---|---|---|---|---|
remove | |||||
1,603,095 | + | +1.8 | |||
1,603,095 | + | -1.2 | |||
1,603,103 | - | +1.8 | |||
1,603,206 | + | Shewana3_1388 | 0.19 | +0.8 | |
1,603,275 | + | Shewana3_1388 | 0.28 | +0.2 | |
1,603,311 | + | Shewana3_1388 | 0.33 | +0.8 | |
1,603,388 | + | Shewana3_1388 | 0.43 | -1.5 | |
1,603,398 | + | Shewana3_1388 | 0.44 | +1.3 | |
1,603,398 | + | Shewana3_1388 | 0.44 | -0.2 | |
1,603,398 | + | Shewana3_1388 | 0.44 | -0.4 | |
1,603,406 | - | +0.8 | |||
1,603,633 | - | Shewana3_1388 | 0.75 | +0.2 | |
1,603,866 | - | +1.8 | |||
1,604,197 | - | Shewana3_1389 | 0.55 | -0.4 | |
1,604,302 | + | Shewana3_1389 | 0.75 | -1.0 | |
1,604,337 | + | Shewana3_1389 | 0.82 | -1.8 | |
1,604,569 | + | +1.8 | |||
1,604,589 | - | -0.8 | |||
1,604,617 | + | -0.1 | |||
1,604,617 | - | +0.2 | |||
1,604,813 | + | +0.8 | |||
1,604,821 | - | -0.2 | |||
1,604,906 | + | Shewana3_1390 | 0.12 | +2.4 | |
1,604,914 | - | Shewana3_1390 | 0.13 | +2.8 | |
1,604,914 | - | Shewana3_1390 | 0.13 | +0.8 | |
1,605,095 | + | Shewana3_1390 | 0.26 | +0.8 | |
1,605,282 | + | Shewana3_1390 | 0.40 | -1.8 | |
1,605,340 | + | Shewana3_1390 | 0.44 | -0.9 | |
1,605,421 | + | Shewana3_1390 | 0.50 | +0.4 |
Or see this region's nucleotide sequence