Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1375 and Shewana3_1376 are separated by 240 nucleotides Shewana3_1376 and Shewana3_1377 are separated by 39 nucleotides
Shewana3_1375: Shewana3_1375 - polysaccharide export protein (RefSeq), at 1,588,920 to 1,591,433
_1375
Shewana3_1376: Shewana3_1376 - lipopolysaccharide biosynthesis (RefSeq), at 1,591,674 to 1,592,630
_1376
Shewana3_1377: Shewana3_1377 - sugar transferase (RefSeq), at 1,592,670 to 1,593,659
_1377
Position (kb)
1591
1592
1593 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1591.532 kb on - strand at 1591.572 kb on - strand at 1591.737 kb on + strand at 1592.210 kb on - strand, within Shewana3_1376 at 1592.631 kb on + strand at 1592.668 kb on - strand at 1592.885 kb on + strand, within Shewana3_1377 at 1592.922 kb on + strand, within Shewana3_1377 at 1593.007 kb on + strand, within Shewana3_1377 at 1593.007 kb on + strand, within Shewana3_1377 at 1593.009 kb on + strand, within Shewana3_1377 at 1593.125 kb on + strand, within Shewana3_1377 at 1593.125 kb on + strand, within Shewana3_1377 at 1593.125 kb on + strand, within Shewana3_1377 at 1593.139 kb on + strand, within Shewana3_1377 at 1593.155 kb on + strand, within Shewana3_1377 at 1593.184 kb on + strand, within Shewana3_1377 at 1593.184 kb on + strand, within Shewana3_1377 at 1593.214 kb on + strand, within Shewana3_1377 at 1593.214 kb on + strand, within Shewana3_1377 at 1593.219 kb on + strand, within Shewana3_1377 at 1593.219 kb on + strand, within Shewana3_1377 at 1593.219 kb on + strand, within Shewana3_1377 at 1593.280 kb on + strand, within Shewana3_1377 at 1593.483 kb on + strand, within Shewana3_1377 at 1593.483 kb on + strand, within Shewana3_1377 at 1593.483 kb on + strand, within Shewana3_1377 at 1593.483 kb on + strand, within Shewana3_1377 at 1593.483 kb on + strand, within Shewana3_1377 at 1593.491 kb on + strand, within Shewana3_1377 at 1593.493 kb on + strand, within Shewana3_1377 at 1593.501 kb on + strand, within Shewana3_1377 at 1593.529 kb on + strand, within Shewana3_1377
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,591,532 - +0.8 1,591,572 - +0.8 1,591,737 + -2.2 1,592,210 - Shewana3_1376 0.56 -0.8 1,592,631 + +0.7 1,592,668 - +0.2 1,592,885 + Shewana3_1377 0.22 +1.1 1,592,922 + Shewana3_1377 0.25 +1.6 1,593,007 + Shewana3_1377 0.34 +0.4 1,593,007 + Shewana3_1377 0.34 +2.3 1,593,009 + Shewana3_1377 0.34 +1.1 1,593,125 + Shewana3_1377 0.46 +2.1 1,593,125 + Shewana3_1377 0.46 +2.4 1,593,125 + Shewana3_1377 0.46 +1.2 1,593,139 + Shewana3_1377 0.47 +1.9 1,593,155 + Shewana3_1377 0.49 +1.3 1,593,184 + Shewana3_1377 0.52 +0.9 1,593,184 + Shewana3_1377 0.52 +2.7 1,593,214 + Shewana3_1377 0.55 +2.5 1,593,214 + Shewana3_1377 0.55 +1.1 1,593,219 + Shewana3_1377 0.55 +2.9 1,593,219 + Shewana3_1377 0.55 +1.4 1,593,219 + Shewana3_1377 0.55 +1.2 1,593,280 + Shewana3_1377 0.62 +2.7 1,593,483 + Shewana3_1377 0.82 +1.1 1,593,483 + Shewana3_1377 0.82 +0.8 1,593,483 + Shewana3_1377 0.82 +1.0 1,593,483 + Shewana3_1377 0.82 +2.5 1,593,483 + Shewana3_1377 0.82 +0.7 1,593,491 + Shewana3_1377 0.83 +2.6 1,593,493 + Shewana3_1377 0.83 +0.4 1,593,501 + Shewana3_1377 0.84 +2.4 1,593,529 + Shewana3_1377 0.87 +0.9
Or see this region's nucleotide sequence