Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1160

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1159 and Shewana3_1160 are separated by 66 nucleotidesShewana3_1160 and Shewana3_1161 are separated by 416 nucleotides Shewana3_1159: Shewana3_1159 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 1,365,887 to 1,366,954 _1159 Shewana3_1160: Shewana3_1160 - ATP-dependent protease, putative (RefSeq), at 1,367,021 to 1,369,438 _1160 Shewana3_1161: Shewana3_1161 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,369,855 to 1,372,491 _1161 Position (kb) 1367 1368 1369 1370Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1366.036 kb on + strand, within Shewana3_1159at 1366.111 kb on - strand, within Shewana3_1159at 1366.159 kb on + strand, within Shewana3_1159at 1366.217 kb on + strand, within Shewana3_1159at 1366.257 kb on + strand, within Shewana3_1159at 1366.352 kb on - strand, within Shewana3_1159at 1366.352 kb on - strand, within Shewana3_1159at 1366.570 kb on + strand, within Shewana3_1159at 1366.688 kb on + strand, within Shewana3_1159at 1366.947 kb on - strandat 1366.962 kb on - strandat 1366.962 kb on - strandat 1367.028 kb on + strandat 1367.028 kb on + strandat 1367.036 kb on - strandat 1367.036 kb on - strandat 1367.308 kb on + strand, within Shewana3_1160at 1367.312 kb on + strand, within Shewana3_1160at 1367.446 kb on - strand, within Shewana3_1160at 1367.576 kb on - strand, within Shewana3_1160at 1367.593 kb on + strand, within Shewana3_1160at 1367.605 kb on + strand, within Shewana3_1160at 1367.619 kb on + strand, within Shewana3_1160at 1367.620 kb on - strand, within Shewana3_1160at 1367.938 kb on - strand, within Shewana3_1160at 1367.959 kb on - strand, within Shewana3_1160at 1368.049 kb on + strand, within Shewana3_1160at 1368.177 kb on - strand, within Shewana3_1160at 1368.212 kb on - strand, within Shewana3_1160at 1368.212 kb on - strand, within Shewana3_1160at 1368.241 kb on + strand, within Shewana3_1160at 1368.286 kb on + strand, within Shewana3_1160at 1368.409 kb on + strand, within Shewana3_1160at 1368.531 kb on + strand, within Shewana3_1160at 1368.617 kb on + strand, within Shewana3_1160at 1368.948 kb on - strand, within Shewana3_1160at 1369.108 kb on + strand, within Shewana3_1160at 1369.108 kb on + strand, within Shewana3_1160at 1369.108 kb on + strand, within Shewana3_1160at 1369.116 kb on - strand, within Shewana3_1160at 1369.116 kb on - strand, within Shewana3_1160at 1369.183 kb on + strand, within Shewana3_1160at 1369.353 kb on + strandat 1369.361 kb on - strandat 1369.487 kb on - strandat 1369.778 kb on + strandat 1370.083 kb on - strandat 1370.248 kb on - strand, within Shewana3_1161at 1370.340 kb on + strand, within Shewana3_1161at 1370.346 kb on - strand, within Shewana3_1161at 1370.402 kb on + strand, within Shewana3_1161

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,366,036 + Shewana3_1159 0.14 -0.4
1,366,111 - Shewana3_1159 0.21 +0.5
1,366,159 + Shewana3_1159 0.25 +0.2
1,366,217 + Shewana3_1159 0.31 -0.3
1,366,257 + Shewana3_1159 0.35 -0.1
1,366,352 - Shewana3_1159 0.44 +1.7
1,366,352 - Shewana3_1159 0.44 -2.8
1,366,570 + Shewana3_1159 0.64 +0.3
1,366,688 + Shewana3_1159 0.75 +0.6
1,366,947 - -1.0
1,366,962 - +0.6
1,366,962 - -0.3
1,367,028 + +0.1
1,367,028 + -0.3
1,367,036 - +0.8
1,367,036 - -0.2
1,367,308 + Shewana3_1160 0.12 +0.5
1,367,312 + Shewana3_1160 0.12 -0.5
1,367,446 - Shewana3_1160 0.18 +0.2
1,367,576 - Shewana3_1160 0.23 -0.7
1,367,593 + Shewana3_1160 0.24 +0.0
1,367,605 + Shewana3_1160 0.24 -0.5
1,367,619 + Shewana3_1160 0.25 -0.1
1,367,620 - Shewana3_1160 0.25 -0.1
1,367,938 - Shewana3_1160 0.38 -1.9
1,367,959 - Shewana3_1160 0.39 -0.4
1,368,049 + Shewana3_1160 0.43 -0.6
1,368,177 - Shewana3_1160 0.48 -0.6
1,368,212 - Shewana3_1160 0.49 -1.3
1,368,212 - Shewana3_1160 0.49 -1.5
1,368,241 + Shewana3_1160 0.50 +2.7
1,368,286 + Shewana3_1160 0.52 -1.5
1,368,409 + Shewana3_1160 0.57 +1.0
1,368,531 + Shewana3_1160 0.62 -0.6
1,368,617 + Shewana3_1160 0.66 +0.6
1,368,948 - Shewana3_1160 0.80 -0.4
1,369,108 + Shewana3_1160 0.86 -0.7
1,369,108 + Shewana3_1160 0.86 -0.4
1,369,108 + Shewana3_1160 0.86 -0.6
1,369,116 - Shewana3_1160 0.87 +0.1
1,369,116 - Shewana3_1160 0.87 -0.5
1,369,183 + Shewana3_1160 0.89 -2.0
1,369,353 + -1.0
1,369,361 - -0.8
1,369,487 - -1.3
1,369,778 + -1.1
1,370,083 - -0.6
1,370,248 - Shewana3_1161 0.15 -0.3
1,370,340 + Shewana3_1161 0.18 +0.2
1,370,346 - Shewana3_1161 0.19 +0.9
1,370,402 + Shewana3_1161 0.21 -0.3

Or see this region's nucleotide sequence