Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1126

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1125 and recA are separated by 382 nucleotidesrecA and Shewana3_1127 are separated by 113 nucleotidesShewana3_1127 and alaS are separated by 275 nucleotides Shewana3_1125: Shewana3_1125 - DNA mismatch repair protein MutS (RefSeq), at 1,323,429 to 1,326,014 _1125 Shewana3_1126: recA - recombinase A (RefSeq), at 1,326,397 to 1,327,470 recA Shewana3_1127: Shewana3_1127 - regulatory protein RecX (RefSeq), at 1,327,584 to 1,327,955 _1127 Shewana3_1128: alaS - alanyl-tRNA synthetase (RefSeq), at 1,328,231 to 1,330,855 alaS Position (kb) 1326 1327 1328Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1325.700 kb on - strand, within Shewana3_1125at 1325.775 kb on + strandat 1325.775 kb on + strandat 1325.783 kb on - strandat 1325.872 kb on + strandat 1325.892 kb on - strandat 1325.894 kb on + strandat 1325.902 kb on - strandat 1325.902 kb on - strandat 1326.052 kb on + strandat 1326.154 kb on + strandat 1326.261 kb on + strandat 1326.263 kb on + strandat 1326.269 kb on - strandat 1326.294 kb on - strandat 1326.377 kb on + strandat 1326.377 kb on + strandat 1326.385 kb on - strandat 1326.385 kb on - strandat 1326.476 kb on + strandat 1326.588 kb on + strand, within recAat 1326.626 kb on + strand, within recAat 1326.634 kb on - strand, within recAat 1326.942 kb on + strand, within recAat 1327.047 kb on + strand, within recAat 1327.047 kb on + strand, within recAat 1327.146 kb on - strand, within recAat 1327.294 kb on + strand, within recAat 1327.294 kb on + strand, within recAat 1327.302 kb on - strand, within recAat 1327.302 kb on - strand, within recAat 1327.366 kb on - strandat 1327.401 kb on + strandat 1327.464 kb on + strandat 1327.964 kb on - strandat 1327.976 kb on + strandat 1327.981 kb on + strandat 1328.124 kb on + strandat 1328.124 kb on + strandat 1328.124 kb on + strandat 1328.132 kb on - strandat 1328.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,325,700 - Shewana3_1125 0.88 +0.1
1,325,775 + +0.7
1,325,775 + +1.7
1,325,783 - +0.7
1,325,872 + +1.5
1,325,892 - +0.1
1,325,894 + -0.3
1,325,902 - +0.1
1,325,902 - +0.8
1,326,052 + +0.7
1,326,154 + -0.6
1,326,261 + -0.9
1,326,263 + -1.5
1,326,269 - -0.8
1,326,294 - +1.1
1,326,377 + -2.9
1,326,377 + -5.8
1,326,385 - -1.1
1,326,385 - -0.6
1,326,476 + -3.2
1,326,588 + recA Shewana3_1126 0.18 -3.9
1,326,626 + recA Shewana3_1126 0.21 -4.6
1,326,634 - recA Shewana3_1126 0.22 -0.6
1,326,942 + recA Shewana3_1126 0.51 -3.5
1,327,047 + recA Shewana3_1126 0.61 -5.4
1,327,047 + recA Shewana3_1126 0.61 -4.1
1,327,146 - recA Shewana3_1126 0.70 +0.1
1,327,294 + recA Shewana3_1126 0.84 -4.2
1,327,294 + recA Shewana3_1126 0.84 -4.9
1,327,302 - recA Shewana3_1126 0.84 +0.7
1,327,302 - recA Shewana3_1126 0.84 +1.7
1,327,366 - -1.3
1,327,401 + -0.0
1,327,464 + -0.2
1,327,964 - +1.3
1,327,976 + -0.0
1,327,981 + -0.3
1,328,124 + -1.0
1,328,124 + -0.5
1,328,124 + -0.4
1,328,132 - +1.0
1,328,132 - -0.5

Or see this region's nucleotide sequence