Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0944 and Shewana3_0945 are separated by 11 nucleotides Shewana3_0945 and Shewana3_0946 are separated by 238 nucleotides Shewana3_0946 and Shewana3_0947 are separated by 9 nucleotides Shewana3_0947 and Shewana3_0948 are separated by 299 nucleotides
Shewana3_0944: Shewana3_0944 - ApbE family lipoprotein (RefSeq), at 1,105,032 to 1,106,156
_0944
Shewana3_0945: Shewana3_0945 - hypothetical protein (RefSeq), at 1,106,168 to 1,106,392
_0945
Shewana3_0946: Shewana3_0946 - bacterioferritin (RefSeq), at 1,106,631 to 1,107,104
_0946
Shewana3_0947: Shewana3_0947 - bacterioferritin (RefSeq), at 1,107,114 to 1,107,581
_0947
Shewana3_0948: Shewana3_0948 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,107,881 to 1,109,884
_0948
Position (kb)
1107
1108 Strain fitness (log2 ratio)
-2
-1
0
1 at 1106.135 kb on + strand at 1106.160 kb on + strand at 1106.884 kb on - strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.941 kb on + strand, within Shewana3_0946 at 1106.949 kb on - strand, within Shewana3_0946 at 1107.180 kb on + strand, within Shewana3_0947 at 1107.331 kb on + strand, within Shewana3_0947 at 1107.402 kb on - strand, within Shewana3_0947 at 1107.536 kb on + strand at 1107.584 kb on + strand at 1107.584 kb on - strand at 1107.668 kb on - strand at 1107.996 kb on + strand at 1108.300 kb on + strand, within Shewana3_0948 at 1108.308 kb on - strand, within Shewana3_0948 at 1108.446 kb on + strand, within Shewana3_0948
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,106,135 + -0.3 1,106,160 + -0.8 1,106,884 - Shewana3_0946 0.53 -0.6 1,106,941 + Shewana3_0946 0.65 -0.4 1,106,941 + Shewana3_0946 0.65 +0.3 1,106,941 + Shewana3_0946 0.65 -0.2 1,106,941 + Shewana3_0946 0.65 -0.1 1,106,949 - Shewana3_0946 0.67 +1.3 1,107,180 + Shewana3_0947 0.14 -2.5 1,107,331 + Shewana3_0947 0.46 -0.4 1,107,402 - Shewana3_0947 0.62 -2.3 1,107,536 + +0.3 1,107,584 + +1.0 1,107,584 - +1.7 1,107,668 - -1.9 1,107,996 + -0.6 1,108,300 + Shewana3_0948 0.21 +0.7 1,108,308 - Shewana3_0948 0.21 -1.2 1,108,446 + Shewana3_0948 0.28 +0.4
Or see this region's nucleotide sequence