Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0859 and Shewana3_0860 are separated by 53 nucleotides Shewana3_0860 and Shewana3_0861 are separated by 186 nucleotides
Shewana3_0859: Shewana3_0859 - hypothetical protein (RefSeq), at 999,571 to 1,001,307
_0859
Shewana3_0860: Shewana3_0860 - hypothetical protein (RefSeq), at 1,001,361 to 1,002,908
_0860
Shewana3_0861: Shewana3_0861 - phospholipase A1 (RefSeq), at 1,003,095 to 1,003,979
_0861
Position (kb)
1001
1002
1003 Strain fitness (log2 ratio)
-2
-1
0
1 at 1000.443 kb on + strand, within Shewana3_0859 at 1000.783 kb on + strand, within Shewana3_0859 at 1000.901 kb on - strand, within Shewana3_0859 at 1000.975 kb on + strand, within Shewana3_0859 at 1000.975 kb on + strand, within Shewana3_0859 at 1001.059 kb on + strand, within Shewana3_0859 at 1001.142 kb on + strand at 1001.384 kb on + strand at 1001.385 kb on - strand at 1001.429 kb on + strand at 1001.434 kb on + strand at 1001.438 kb on - strand at 1001.474 kb on - strand at 1001.504 kb on - strand at 1001.574 kb on - strand, within Shewana3_0860 at 1001.574 kb on - strand, within Shewana3_0860 at 1001.697 kb on - strand, within Shewana3_0860 at 1001.874 kb on + strand, within Shewana3_0860 at 1001.879 kb on + strand, within Shewana3_0860 at 1001.879 kb on + strand, within Shewana3_0860 at 1001.931 kb on + strand, within Shewana3_0860 at 1002.047 kb on - strand, within Shewana3_0860 at 1002.078 kb on - strand, within Shewana3_0860 at 1002.096 kb on - strand, within Shewana3_0860 at 1002.151 kb on + strand, within Shewana3_0860 at 1002.164 kb on - strand, within Shewana3_0860 at 1002.225 kb on - strand, within Shewana3_0860 at 1002.404 kb on - strand, within Shewana3_0860 at 1002.518 kb on - strand, within Shewana3_0860 at 1002.560 kb on - strand, within Shewana3_0860 at 1002.767 kb on + strand at 1002.879 kb on + strand at 1002.881 kb on - strand at 1002.887 kb on - strand at 1003.086 kb on + strand at 1003.127 kb on - strand at 1003.274 kb on + strand, within Shewana3_0861 at 1003.285 kb on + strand, within Shewana3_0861 at 1003.337 kb on - strand, within Shewana3_0861 at 1003.361 kb on - strand, within Shewana3_0861 at 1003.449 kb on + strand, within Shewana3_0861 at 1003.537 kb on + strand, within Shewana3_0861 at 1003.537 kb on + strand, within Shewana3_0861 at 1003.830 kb on + strand, within Shewana3_0861
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 1,000,443 + Shewana3_0859 0.50 -0.4 1,000,783 + Shewana3_0859 0.70 +0.6 1,000,901 - Shewana3_0859 0.77 -1.9 1,000,975 + Shewana3_0859 0.81 -0.4 1,000,975 + Shewana3_0859 0.81 +0.3 1,001,059 + Shewana3_0859 0.86 +0.1 1,001,142 + +0.0 1,001,384 + -0.4 1,001,385 - +0.0 1,001,429 + -0.5 1,001,434 + +0.3 1,001,438 - +0.1 1,001,474 - +0.5 1,001,504 - +0.4 1,001,574 - Shewana3_0860 0.14 +1.0 1,001,574 - Shewana3_0860 0.14 +0.7 1,001,697 - Shewana3_0860 0.22 +0.3 1,001,874 + Shewana3_0860 0.33 +1.0 1,001,879 + Shewana3_0860 0.33 +0.7 1,001,879 + Shewana3_0860 0.33 -0.0 1,001,931 + Shewana3_0860 0.37 +0.1 1,002,047 - Shewana3_0860 0.44 -0.5 1,002,078 - Shewana3_0860 0.46 +0.7 1,002,096 - Shewana3_0860 0.47 -0.9 1,002,151 + Shewana3_0860 0.51 -0.4 1,002,164 - Shewana3_0860 0.52 +0.1 1,002,225 - Shewana3_0860 0.56 +0.5 1,002,404 - Shewana3_0860 0.67 -0.3 1,002,518 - Shewana3_0860 0.75 +0.1 1,002,560 - Shewana3_0860 0.77 -1.1 1,002,767 + +0.1 1,002,879 + -0.0 1,002,881 - -0.2 1,002,887 - +0.3 1,003,086 + -0.4 1,003,127 - -0.3 1,003,274 + Shewana3_0861 0.20 -0.7 1,003,285 + Shewana3_0861 0.21 +1.0 1,003,337 - Shewana3_0861 0.27 -0.5 1,003,361 - Shewana3_0861 0.30 -0.8 1,003,449 + Shewana3_0861 0.40 -0.5 1,003,537 + Shewana3_0861 0.50 -1.5 1,003,537 + Shewana3_0861 0.50 -0.6 1,003,830 + Shewana3_0861 0.83 -0.1
Or see this region's nucleotide sequence