Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0723 and Shewana3_0724 are separated by 44 nucleotides Shewana3_0724 and tolC are separated by 72 nucleotides tolC and Shewana3_0726 are separated by 243 nucleotides Shewana3_0726 and Shewana3_0727 overlap by 8 nucleotides
Shewana3_0723: Shewana3_0723 - hypothetical protein (RefSeq), at 839,748 to 840,716
_0723
Shewana3_0724: Shewana3_0724 - hypothetical protein (RefSeq), at 840,761 to 841,456
_0724
Shewana3_0725: tolC - outer membrane channel protein (RefSeq), at 841,529 to 842,836
tolC
Shewana3_0726: Shewana3_0726 - nucleoside diphosphate pyrophosphatase (RefSeq), at 843,080 to 843,691
_0726
Shewana3_0727: Shewana3_0727 - hypothetical protein (RefSeq), at 843,684 to 844,136
_0727
Position (kb) 841
842
843 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 840.549 kb on - strand, within Shewana3_0723 at 840.593 kb on - strand, within Shewana3_0723 at 840.615 kb on + strand, within Shewana3_0723 at 840.675 kb on + strand at 840.746 kb on + strand at 840.746 kb on + strand at 840.754 kb on - strand at 840.890 kb on + strand, within Shewana3_0724 at 840.995 kb on + strand, within Shewana3_0724 at 841.054 kb on - strand, within Shewana3_0724 at 841.072 kb on + strand, within Shewana3_0724 at 841.092 kb on + strand, within Shewana3_0724 at 841.121 kb on + strand, within Shewana3_0724 at 841.220 kb on + strand, within Shewana3_0724 at 841.220 kb on + strand, within Shewana3_0724 at 841.313 kb on + strand, within Shewana3_0724 at 841.671 kb on - strand, within tolC at 841.671 kb on - strand, within tolC at 841.770 kb on - strand, within tolC at 841.839 kb on - strand, within tolC at 841.894 kb on + strand, within tolC at 842.002 kb on - strand, within tolC at 842.252 kb on - strand, within tolC at 842.494 kb on - strand, within tolC at 842.494 kb on - strand, within tolC at 842.530 kb on - strand, within tolC at 842.530 kb on - strand, within tolC at 842.530 kb on - strand, within tolC at 842.656 kb on - strand, within tolC at 842.740 kb on - strand at 842.960 kb on - strand at 842.984 kb on + strand at 843.003 kb on + strand at 843.248 kb on + strand, within Shewana3_0726 at 843.401 kb on + strand, within Shewana3_0726 at 843.462 kb on + strand, within Shewana3_0726 at 843.470 kb on - strand, within Shewana3_0726 at 843.484 kb on + strand, within Shewana3_0726 at 843.501 kb on - strand, within Shewana3_0726 at 843.510 kb on + strand, within Shewana3_0726 at 843.572 kb on + strand, within Shewana3_0726 at 843.580 kb on - strand, within Shewana3_0726 at 843.761 kb on + strand, within Shewana3_0727 at 843.791 kb on - strand, within Shewana3_0727 at 843.805 kb on + strand, within Shewana3_0727 at 843.821 kb on + strand, within Shewana3_0727 at 843.830 kb on + strand, within Shewana3_0727
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 840,549 - Shewana3_0723 0.83 -0.6 840,593 - Shewana3_0723 0.87 +1.7 840,615 + Shewana3_0723 0.89 +0.3 840,675 + +0.8 840,746 + +0.1 840,746 + +0.3 840,754 - +0.7 840,890 + Shewana3_0724 0.19 -0.4 840,995 + Shewana3_0724 0.34 +0.7 841,054 - Shewana3_0724 0.42 +0.1 841,072 + Shewana3_0724 0.45 -0.1 841,092 + Shewana3_0724 0.48 +0.6 841,121 + Shewana3_0724 0.52 -0.1 841,220 + Shewana3_0724 0.66 +0.4 841,220 + Shewana3_0724 0.66 +0.6 841,313 + Shewana3_0724 0.79 +1.1 841,671 - tolC Shewana3_0725 0.11 -0.9 841,671 - tolC Shewana3_0725 0.11 -2.4 841,770 - tolC Shewana3_0725 0.18 -0.8 841,839 - tolC Shewana3_0725 0.24 -0.5 841,894 + tolC Shewana3_0725 0.28 +1.7 842,002 - tolC Shewana3_0725 0.36 -1.9 842,252 - tolC Shewana3_0725 0.55 -0.9 842,494 - tolC Shewana3_0725 0.74 -1.3 842,494 - tolC Shewana3_0725 0.74 -1.4 842,530 - tolC Shewana3_0725 0.77 -1.4 842,530 - tolC Shewana3_0725 0.77 -1.7 842,530 - tolC Shewana3_0725 0.77 -0.5 842,656 - tolC Shewana3_0725 0.86 -0.7 842,740 - -0.7 842,960 - -0.7 842,984 + -1.0 843,003 + -1.1 843,248 + Shewana3_0726 0.27 -0.2 843,401 + Shewana3_0726 0.52 +0.2 843,462 + Shewana3_0726 0.62 +0.6 843,470 - Shewana3_0726 0.64 +0.5 843,484 + Shewana3_0726 0.66 +0.4 843,501 - Shewana3_0726 0.69 -0.3 843,510 + Shewana3_0726 0.70 -3.0 843,572 + Shewana3_0726 0.80 +0.5 843,580 - Shewana3_0726 0.82 -0.2 843,761 + Shewana3_0727 0.17 +0.5 843,791 - Shewana3_0727 0.24 +0.6 843,805 + Shewana3_0727 0.27 +0.8 843,821 + Shewana3_0727 0.30 +0.3 843,830 + Shewana3_0727 0.32 +0.2
Or see this region's nucleotide sequence