Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0591 and Shewana3_0592 are separated by 244 nucleotides Shewana3_0592 and Shewana3_0593 are separated by 79 nucleotides Shewana3_0593 and Shewana3_0594 are separated by 8 nucleotides
Shewana3_0591: Shewana3_0591 - hypothetical protein (RefSeq), at 693,763 to 694,218
_0591
Shewana3_0592: Shewana3_0592 - carbohydrate kinase, YjeF related protein (RefSeq), at 694,463 to 695,962
_0592
Shewana3_0593: Shewana3_0593 - hypothetical protein (RefSeq), at 696,042 to 696,500
_0593
Shewana3_0594: Shewana3_0594 - cell wall hydrolase/autolysin (RefSeq), at 696,509 to 697,900
_0594
Position (kb) 694
695
696 Strain fitness (log2 ratio) -2
-1
0
1
2 at 693.522 kb on + strand at 693.734 kb on + strand at 693.741 kb on + strand at 693.741 kb on + strand at 693.741 kb on + strand at 693.746 kb on + strand at 693.749 kb on - strand at 693.823 kb on + strand, within Shewana3_0591 at 694.021 kb on - strand, within Shewana3_0591 at 694.180 kb on + strand at 694.180 kb on + strand at 694.237 kb on + strand at 694.252 kb on + strand at 694.317 kb on + strand at 694.422 kb on - strand at 694.610 kb on - strand at 694.759 kb on - strand, within Shewana3_0592 at 694.768 kb on + strand, within Shewana3_0592 at 694.799 kb on - strand, within Shewana3_0592 at 694.946 kb on - strand, within Shewana3_0592 at 694.961 kb on - strand, within Shewana3_0592 at 694.961 kb on - strand, within Shewana3_0592 at 695.217 kb on + strand, within Shewana3_0592 at 695.280 kb on + strand, within Shewana3_0592 at 695.314 kb on + strand, within Shewana3_0592 at 695.381 kb on - strand, within Shewana3_0592 at 695.473 kb on + strand, within Shewana3_0592 at 695.509 kb on + strand, within Shewana3_0592
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 693,522 + -0.2 693,734 + +1.8 693,741 + -0.1 693,741 + -0.4 693,741 + +0.2 693,746 + +0.4 693,749 - +0.2 693,823 + Shewana3_0591 0.13 -0.1 694,021 - Shewana3_0591 0.57 -0.1 694,180 + +0.2 694,180 + +0.4 694,237 + -0.1 694,252 + -0.1 694,317 + +0.3 694,422 - -0.0 694,610 - -1.1 694,759 - Shewana3_0592 0.20 -0.4 694,768 + Shewana3_0592 0.20 +0.0 694,799 - Shewana3_0592 0.22 -0.1 694,946 - Shewana3_0592 0.32 -1.9 694,961 - Shewana3_0592 0.33 +0.4 694,961 - Shewana3_0592 0.33 +0.5 695,217 + Shewana3_0592 0.50 -0.1 695,280 + Shewana3_0592 0.54 +0.0 695,314 + Shewana3_0592 0.57 +0.2 695,381 - Shewana3_0592 0.61 -0.6 695,473 + Shewana3_0592 0.67 +0.1 695,509 + Shewana3_0592 0.70 +0.5
Or see this region's nucleotide sequence