Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0436 and Shewana3_0437 are separated by 75 nucleotides Shewana3_0437 and Shewana3_0438 are separated by 3 nucleotides Shewana3_0438 and Shewana3_0439 are separated by 157 nucleotides
Shewana3_0436: Shewana3_0436 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 507,146 to 509,716
_0436
Shewana3_0437: Shewana3_0437 - short chain dehydrogenase (RefSeq), at 509,792 to 510,595
_0437
Shewana3_0438: Shewana3_0438 - hypothetical protein (RefSeq), at 510,599 to 510,823
_0438
Shewana3_0439: Shewana3_0439 - hypothetical protein (RefSeq), at 510,981 to 514,202
_0439
Position (kb) 510
511 Strain fitness (log2 ratio) -2
-1
0
1 at 509.633 kb on + strand at 509.638 kb on + strand at 509.849 kb on - strand at 509.991 kb on - strand, within Shewana3_0437 at 510.005 kb on + strand, within Shewana3_0437 at 510.039 kb on + strand, within Shewana3_0437 at 510.167 kb on + strand, within Shewana3_0437 at 510.175 kb on - strand, within Shewana3_0437 at 510.185 kb on - strand, within Shewana3_0437 at 510.202 kb on - strand, within Shewana3_0437 at 510.234 kb on - strand, within Shewana3_0437 at 510.399 kb on - strand, within Shewana3_0437 at 510.637 kb on - strand, within Shewana3_0438 at 510.733 kb on - strand, within Shewana3_0438 at 510.793 kb on + strand, within Shewana3_0438 at 510.849 kb on + strand at 510.857 kb on - strand at 510.881 kb on - strand at 510.948 kb on + strand at 510.953 kb on + strand at 510.979 kb on + strand at 511.059 kb on + strand at 511.104 kb on - strand at 511.122 kb on - strand at 511.230 kb on - strand at 511.320 kb on + strand, within Shewana3_0439 at 511.376 kb on + strand, within Shewana3_0439 at 511.649 kb on - strand, within Shewana3_0439 at 511.716 kb on - strand, within Shewana3_0439 at 511.764 kb on + strand, within Shewana3_0439 at 511.764 kb on + strand, within Shewana3_0439
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 509,633 + +1.1 509,638 + +0.2 509,849 - +1.7 509,991 - Shewana3_0437 0.25 -2.7 510,005 + Shewana3_0437 0.26 +0.7 510,039 + Shewana3_0437 0.31 +0.2 510,167 + Shewana3_0437 0.47 +0.4 510,175 - Shewana3_0437 0.48 +0.3 510,185 - Shewana3_0437 0.49 -2.0 510,202 - Shewana3_0437 0.51 -0.7 510,234 - Shewana3_0437 0.55 -1.1 510,399 - Shewana3_0437 0.75 -0.1 510,637 - Shewana3_0438 0.17 +0.4 510,733 - Shewana3_0438 0.60 +0.1 510,793 + Shewana3_0438 0.86 +0.0 510,849 + -0.5 510,857 - -0.3 510,881 - +0.2 510,948 + -0.6 510,953 + +1.2 510,979 + +0.6 511,059 + +0.4 511,104 - +0.6 511,122 - -0.2 511,230 - +0.0 511,320 + Shewana3_0439 0.11 -0.0 511,376 + Shewana3_0439 0.12 -0.1 511,649 - Shewana3_0439 0.21 +0.9 511,716 - Shewana3_0439 0.23 -0.4 511,764 + Shewana3_0439 0.24 -0.1 511,764 + Shewana3_0439 0.24 -0.3
Or see this region's nucleotide sequence