Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0268 and Shewana3_0269 are separated by 304 nucleotides Shewana3_0269 and Shewana3_0270 are separated by 117 nucleotides Shewana3_0270 and Shewana3_0271 are separated by 36 nucleotides
Shewana3_0268: Shewana3_0268 - site-specific DNA-methyltransferase (adenine-specific) (RefSeq), at 301,666 to 302,505
_0268
Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267
_0269
Shewana3_0270: Shewana3_0270 - MOSC domain-containing protein (RefSeq), at 304,385 to 305,080
_0270
Shewana3_0271: Shewana3_0271 - hypothetical protein (RefSeq), at 305,117 to 305,473
_0271
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -2
-1
0
1 at 301.819 kb on + strand, within Shewana3_0268 at 301.855 kb on + strand, within Shewana3_0268 at 301.892 kb on - strand, within Shewana3_0268 at 301.897 kb on + strand, within Shewana3_0268 at 301.915 kb on + strand, within Shewana3_0268 at 301.923 kb on - strand, within Shewana3_0268 at 301.940 kb on + strand, within Shewana3_0268 at 301.953 kb on - strand, within Shewana3_0268 at 302.047 kb on - strand, within Shewana3_0268 at 302.141 kb on - strand, within Shewana3_0268 at 302.182 kb on + strand, within Shewana3_0268 at 302.291 kb on + strand, within Shewana3_0268 at 302.299 kb on + strand, within Shewana3_0268 at 302.324 kb on + strand, within Shewana3_0268 at 302.353 kb on + strand, within Shewana3_0268 at 302.415 kb on - strand, within Shewana3_0268 at 302.856 kb on + strand at 302.864 kb on - strand at 302.912 kb on + strand at 302.912 kb on + strand at 303.238 kb on + strand, within Shewana3_0269 at 303.257 kb on - strand, within Shewana3_0269 at 303.318 kb on + strand, within Shewana3_0269 at 303.371 kb on - strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.393 kb on - strand, within Shewana3_0269 at 303.505 kb on - strand, within Shewana3_0269 at 303.535 kb on + strand, within Shewana3_0269 at 303.554 kb on - strand, within Shewana3_0269 at 303.565 kb on - strand, within Shewana3_0269 at 303.668 kb on - strand, within Shewana3_0269 at 303.695 kb on + strand, within Shewana3_0269 at 303.722 kb on - strand, within Shewana3_0269 at 303.765 kb on + strand, within Shewana3_0269 at 303.765 kb on + strand, within Shewana3_0269 at 303.773 kb on - strand, within Shewana3_0269 at 303.929 kb on + strand, within Shewana3_0269 at 303.938 kb on - strand, within Shewana3_0269 at 303.969 kb on + strand, within Shewana3_0269 at 304.149 kb on + strand at 304.149 kb on + strand at 304.157 kb on - strand at 304.272 kb on - strand at 304.352 kb on + strand at 304.536 kb on + strand, within Shewana3_0270 at 304.603 kb on - strand, within Shewana3_0270 at 304.795 kb on - strand, within Shewana3_0270 at 304.804 kb on + strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 305.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 301,819 + Shewana3_0268 0.18 -0.1 301,855 + Shewana3_0268 0.23 +0.3 301,892 - Shewana3_0268 0.27 -0.8 301,897 + Shewana3_0268 0.28 -0.2 301,915 + Shewana3_0268 0.30 +0.1 301,923 - Shewana3_0268 0.31 -1.0 301,940 + Shewana3_0268 0.33 +0.2 301,953 - Shewana3_0268 0.34 -0.4 302,047 - Shewana3_0268 0.45 +0.8 302,141 - Shewana3_0268 0.57 -0.5 302,182 + Shewana3_0268 0.61 -0.0 302,291 + Shewana3_0268 0.74 -0.1 302,299 + Shewana3_0268 0.75 +0.6 302,324 + Shewana3_0268 0.78 +0.0 302,353 + Shewana3_0268 0.82 -0.1 302,415 - Shewana3_0268 0.89 +0.0 302,856 + -0.2 302,864 - -0.4 302,912 + +0.5 302,912 + -0.3 303,238 + Shewana3_0269 0.29 -0.2 303,257 - Shewana3_0269 0.31 -0.5 303,318 + Shewana3_0269 0.35 +0.6 303,371 - Shewana3_0269 0.38 -0.8 303,385 + Shewana3_0269 0.39 -0.1 303,385 + Shewana3_0269 0.39 +0.1 303,393 - Shewana3_0269 0.40 -0.4 303,505 - Shewana3_0269 0.48 -0.1 303,535 + Shewana3_0269 0.50 +0.1 303,554 - Shewana3_0269 0.51 -0.0 303,565 - Shewana3_0269 0.52 -0.6 303,668 - Shewana3_0269 0.59 -0.2 303,695 + Shewana3_0269 0.61 +0.7 303,722 - Shewana3_0269 0.63 -2.1 303,765 + Shewana3_0269 0.66 -0.4 303,765 + Shewana3_0269 0.66 -0.5 303,773 - Shewana3_0269 0.66 -0.5 303,929 + Shewana3_0269 0.77 -0.1 303,938 - Shewana3_0269 0.77 +0.0 303,969 + Shewana3_0269 0.79 +1.5 304,149 + -1.0 304,149 + +0.6 304,157 - -0.2 304,272 - -0.0 304,352 + -0.1 304,536 + Shewana3_0270 0.22 -0.4 304,603 - Shewana3_0270 0.31 -0.5 304,795 - Shewana3_0270 0.59 -0.1 304,804 + Shewana3_0270 0.60 +0.0 304,880 - Shewana3_0270 0.71 +0.4 304,880 - Shewana3_0270 0.71 +0.1 305,104 - -0.4
Or see this region's nucleotide sequence